Hb_001379_070

Information

Type -
Description -
Location Contig1379: 37569-38004
Sequence    

Annotation

kegg
ID vvi:100241199
description phytosulfokines
nr
ID KDP44544.1
description hypothetical protein JCGZ_16377 [Jatropha curcas]
swissprot
ID Q9M2Y0
description Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2
trembl
ID A0A067LJS1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16377 PE=4 SV=1
Gene Ontology
ID GO:0005576
description phytosulfokines 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001379_070 0.0 - - hypothetical protein JCGZ_16377 [Jatropha curcas]
2 Hb_099990_020 0.2328627634 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
3 Hb_003972_040 0.2556911624 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
4 Hb_018691_010 0.263216854 - - -
5 Hb_005854_050 0.2635655568 - - conserved hypothetical protein [Ricinus communis]
6 Hb_104169_010 0.2687238229 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_034280_010 0.2700231625 - - Protein bem46, putative [Ricinus communis]
8 Hb_004705_090 0.2736605746 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000011_380 0.2797038183 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
10 Hb_004770_060 0.2824401244 - - unnamed protein product, partial [Coffea canephora]
11 Hb_006483_030 0.2863826229 - - Cucumisin precursor, putative [Ricinus communis]
12 Hb_001124_110 0.2930779071 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
13 Hb_007741_090 0.2933117128 - - Autophagy-related 8f -like protein [Gossypium arboreum]
14 Hb_173741_010 0.2940283105 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
15 Hb_008536_030 0.2978211793 - - hypothetical protein POPTR_0005s08290g [Populus trichocarpa]
16 Hb_069659_010 0.2997238796 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_000500_080 0.3003506764 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
18 Hb_011381_090 0.3004708553 - - Protein ABC1, mitochondrial precursor, putative [Ricinus communis]
19 Hb_004525_080 0.3032887176 - - Sugar transporter ERD6-like 6 [Morus notabilis]
20 Hb_002368_080 0.304220195 - - PREDICTED: transcription factor SCREAM2-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001379_070 Hb_001379_070 Hb_099990_020 Hb_099990_020 Hb_001379_070--Hb_099990_020 Hb_003972_040 Hb_003972_040 Hb_001379_070--Hb_003972_040 Hb_018691_010 Hb_018691_010 Hb_001379_070--Hb_018691_010 Hb_005854_050 Hb_005854_050 Hb_001379_070--Hb_005854_050 Hb_104169_010 Hb_104169_010 Hb_001379_070--Hb_104169_010 Hb_034280_010 Hb_034280_010 Hb_001379_070--Hb_034280_010 Hb_001059_140 Hb_001059_140 Hb_099990_020--Hb_001059_140 Hb_001486_050 Hb_001486_050 Hb_099990_020--Hb_001486_050 Hb_004525_080 Hb_004525_080 Hb_099990_020--Hb_004525_080 Hb_080081_010 Hb_080081_010 Hb_099990_020--Hb_080081_010 Hb_006816_110 Hb_006816_110 Hb_099990_020--Hb_006816_110 Hb_003972_040--Hb_034280_010 Hb_028115_010 Hb_028115_010 Hb_003972_040--Hb_028115_010 Hb_000413_230 Hb_000413_230 Hb_003972_040--Hb_000413_230 Hb_010872_040 Hb_010872_040 Hb_003972_040--Hb_010872_040 Hb_173741_010 Hb_173741_010 Hb_003972_040--Hb_173741_010 Hb_000679_200 Hb_000679_200 Hb_003972_040--Hb_000679_200 Hb_007441_090 Hb_007441_090 Hb_018691_010--Hb_007441_090 Hb_106688_010 Hb_106688_010 Hb_018691_010--Hb_106688_010 Hb_077573_010 Hb_077573_010 Hb_018691_010--Hb_077573_010 Hb_165402_010 Hb_165402_010 Hb_018691_010--Hb_165402_010 Hb_177152_010 Hb_177152_010 Hb_018691_010--Hb_177152_010 Hb_145317_010 Hb_145317_010 Hb_018691_010--Hb_145317_010 Hb_004033_020 Hb_004033_020 Hb_005854_050--Hb_004033_020 Hb_121694_010 Hb_121694_010 Hb_005854_050--Hb_121694_010 Hb_000011_380 Hb_000011_380 Hb_005854_050--Hb_000011_380 Hb_005854_050--Hb_034280_010 Hb_014096_010 Hb_014096_010 Hb_005854_050--Hb_014096_010 Hb_003455_010 Hb_003455_010 Hb_005854_050--Hb_003455_010 Hb_072290_010 Hb_072290_010 Hb_104169_010--Hb_072290_010 Hb_004705_090 Hb_004705_090 Hb_104169_010--Hb_004705_090 Hb_000365_040 Hb_000365_040 Hb_104169_010--Hb_000365_040 Hb_009411_030 Hb_009411_030 Hb_104169_010--Hb_009411_030 Hb_000860_030 Hb_000860_030 Hb_104169_010--Hb_000860_030 Hb_008536_030 Hb_008536_030 Hb_104169_010--Hb_008536_030 Hb_032208_050 Hb_032208_050 Hb_034280_010--Hb_032208_050 Hb_003050_100 Hb_003050_100 Hb_034280_010--Hb_003050_100 Hb_000032_430 Hb_000032_430 Hb_034280_010--Hb_000032_430 Hb_034280_010--Hb_028115_010 Hb_000110_380 Hb_000110_380 Hb_034280_010--Hb_000110_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18275 1.91979 0.893928 22.2513 4.64028 4.5032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.46676 0.364536

CAGE analysis