Hb_018691_010

Information

Type -
Description -
Location Contig18691: 198-591
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018691_010 0.0 - - -
2 Hb_007441_090 0.1693425841 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
3 Hb_106688_010 0.1757711407 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
4 Hb_077573_010 0.1842170388 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_165402_010 0.1909055803 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
6 Hb_177152_010 0.205426816 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
7 Hb_145317_010 0.2168029846 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
8 Hb_003972_040 0.2182221027 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
9 Hb_060391_010 0.2187803514 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_034280_010 0.2244903262 - - Protein bem46, putative [Ricinus communis]
11 Hb_070541_030 0.2309737859 - - -
12 Hb_001124_110 0.2310752271 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
13 Hb_066514_010 0.2327020634 - - hypothetical protein RCOM_0204720 [Ricinus communis]
14 Hb_004525_080 0.2328196915 - - Sugar transporter ERD6-like 6 [Morus notabilis]
15 Hb_002370_030 0.2345134349 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
16 Hb_000679_200 0.2359140744 - - EIN3-binding F box protein 1 [Theobroma cacao]
17 Hb_000117_080 0.2364446709 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
18 Hb_009247_010 0.2433105004 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
19 Hb_014497_040 0.2445099989 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
20 Hb_088163_010 0.2465552643 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_018691_010 Hb_018691_010 Hb_007441_090 Hb_007441_090 Hb_018691_010--Hb_007441_090 Hb_106688_010 Hb_106688_010 Hb_018691_010--Hb_106688_010 Hb_077573_010 Hb_077573_010 Hb_018691_010--Hb_077573_010 Hb_165402_010 Hb_165402_010 Hb_018691_010--Hb_165402_010 Hb_177152_010 Hb_177152_010 Hb_018691_010--Hb_177152_010 Hb_145317_010 Hb_145317_010 Hb_018691_010--Hb_145317_010 Hb_007441_090--Hb_106688_010 Hb_066514_010 Hb_066514_010 Hb_007441_090--Hb_066514_010 Hb_007441_090--Hb_165402_010 Hb_017159_010 Hb_017159_010 Hb_007441_090--Hb_017159_010 Hb_001708_010 Hb_001708_010 Hb_007441_090--Hb_001708_010 Hb_106688_010--Hb_165402_010 Hb_106688_010--Hb_077573_010 Hb_040747_010 Hb_040747_010 Hb_106688_010--Hb_040747_010 Hb_106688_010--Hb_145317_010 Hb_009247_010 Hb_009247_010 Hb_106688_010--Hb_009247_010 Hb_012506_010 Hb_012506_010 Hb_077573_010--Hb_012506_010 Hb_077573_010--Hb_165402_010 Hb_099878_050 Hb_099878_050 Hb_077573_010--Hb_099878_050 Hb_181441_010 Hb_181441_010 Hb_077573_010--Hb_181441_010 Hb_077573_010--Hb_009247_010 Hb_165402_010--Hb_181441_010 Hb_075764_010 Hb_075764_010 Hb_165402_010--Hb_075764_010 Hb_000230_180 Hb_000230_180 Hb_165402_010--Hb_000230_180 Hb_002611_020 Hb_002611_020 Hb_165402_010--Hb_002611_020 Hb_013358_100 Hb_013358_100 Hb_177152_010--Hb_013358_100 Hb_177152_010--Hb_145317_010 Hb_169329_010 Hb_169329_010 Hb_177152_010--Hb_169329_010 Hb_035436_010 Hb_035436_010 Hb_177152_010--Hb_035436_010 Hb_065841_010 Hb_065841_010 Hb_177152_010--Hb_065841_010 Hb_178620_010 Hb_178620_010 Hb_177152_010--Hb_178620_010 Hb_008054_050 Hb_008054_050 Hb_145317_010--Hb_008054_050 Hb_145317_010--Hb_009247_010 Hb_154538_010 Hb_154538_010 Hb_145317_010--Hb_154538_010 Hb_004374_130 Hb_004374_130 Hb_145317_010--Hb_004374_130 Hb_009393_200 Hb_009393_200 Hb_145317_010--Hb_009393_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.12472 9.83254 8.0893 32.6736 4.39406 16.5016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0722 1.27265 0 12.7036 0.600759

CAGE analysis