Hb_012506_010

Information

Type -
Description -
Location Contig12506: 16772-20785
Sequence    

Annotation

kegg
ID cic:CICLE_v10028621mg
description hypothetical protein
nr
ID XP_012076170.1
description PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
swissprot
ID Q9SGE0
description UDP-D-apiose/UDP-D-xylose synthase 2 OS=Arabidopsis thaliana GN=AXS2 PE=2 SV=1
trembl
ID A0A067KH84
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11236 PE=4 SV=1
Gene Ontology
ID GO:0005829
description udp-d-apiose udp-d-xylose synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07649: 17018-20704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012506_010 0.0 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
2 Hb_077573_010 0.1132964895 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_099878_050 0.1235494221 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
4 Hb_131035_010 0.1293057444 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_146081_010 0.1309826826 - - PREDICTED: protein SCAI [Jatropha curcas]
6 Hb_009787_050 0.1377639629 - - (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
7 Hb_000836_550 0.139611056 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
8 Hb_000116_150 0.1400462923 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
9 Hb_027760_070 0.1430720672 - - PREDICTED: uncharacterized endoplasmic reticulum membrane protein C16E8.02-like [Jatropha curcas]
10 Hb_001135_140 0.1431589289 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
11 Hb_005765_010 0.144378467 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
12 Hb_008749_060 0.1475197971 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
13 Hb_000322_180 0.1479057523 - - recA family protein [Populus trichocarpa]
14 Hb_002874_090 0.1504243427 - - PREDICTED: uncharacterized protein LOC105637452 [Jatropha curcas]
15 Hb_003363_080 0.1523035136 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
16 Hb_103760_010 0.1526742673 - - serine/arginine rich splicing factor, putative [Ricinus communis]
17 Hb_013358_080 0.1533637283 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
18 Hb_054586_020 0.1536989502 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
19 Hb_013358_090 0.1546420282 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
20 Hb_000035_200 0.1553630611 - - PREDICTED: phospholipase D Z-like [Jatropha curcas]

Gene co-expression network

sample Hb_012506_010 Hb_012506_010 Hb_077573_010 Hb_077573_010 Hb_012506_010--Hb_077573_010 Hb_099878_050 Hb_099878_050 Hb_012506_010--Hb_099878_050 Hb_131035_010 Hb_131035_010 Hb_012506_010--Hb_131035_010 Hb_146081_010 Hb_146081_010 Hb_012506_010--Hb_146081_010 Hb_009787_050 Hb_009787_050 Hb_012506_010--Hb_009787_050 Hb_000836_550 Hb_000836_550 Hb_012506_010--Hb_000836_550 Hb_165402_010 Hb_165402_010 Hb_077573_010--Hb_165402_010 Hb_106688_010 Hb_106688_010 Hb_077573_010--Hb_106688_010 Hb_077573_010--Hb_099878_050 Hb_181441_010 Hb_181441_010 Hb_077573_010--Hb_181441_010 Hb_009247_010 Hb_009247_010 Hb_077573_010--Hb_009247_010 Hb_106415_010 Hb_106415_010 Hb_099878_050--Hb_106415_010 Hb_075764_010 Hb_075764_010 Hb_099878_050--Hb_075764_010 Hb_013358_090 Hb_013358_090 Hb_099878_050--Hb_013358_090 Hb_133724_010 Hb_133724_010 Hb_099878_050--Hb_133724_010 Hb_002687_080 Hb_002687_080 Hb_099878_050--Hb_002687_080 Hb_000035_200 Hb_000035_200 Hb_131035_010--Hb_000035_200 Hb_002192_030 Hb_002192_030 Hb_131035_010--Hb_002192_030 Hb_007286_020 Hb_007286_020 Hb_131035_010--Hb_007286_020 Hb_001500_110 Hb_001500_110 Hb_131035_010--Hb_001500_110 Hb_027760_070 Hb_027760_070 Hb_131035_010--Hb_027760_070 Hb_131035_010--Hb_146081_010 Hb_000322_070 Hb_000322_070 Hb_146081_010--Hb_000322_070 Hb_162060_010 Hb_162060_010 Hb_146081_010--Hb_162060_010 Hb_030736_070 Hb_030736_070 Hb_146081_010--Hb_030736_070 Hb_001114_110 Hb_001114_110 Hb_146081_010--Hb_001114_110 Hb_000116_150 Hb_000116_150 Hb_146081_010--Hb_000116_150 Hb_145880_010 Hb_145880_010 Hb_146081_010--Hb_145880_010 Hb_003363_080 Hb_003363_080 Hb_009787_050--Hb_003363_080 Hb_000962_030 Hb_000962_030 Hb_009787_050--Hb_000962_030 Hb_009787_050--Hb_001114_110 Hb_005765_010 Hb_005765_010 Hb_009787_050--Hb_005765_010 Hb_009787_050--Hb_146081_010 Hb_002307_280 Hb_002307_280 Hb_009787_050--Hb_002307_280 Hb_003055_040 Hb_003055_040 Hb_000836_550--Hb_003055_040 Hb_006573_210 Hb_006573_210 Hb_000836_550--Hb_006573_210 Hb_006910_060 Hb_006910_060 Hb_000836_550--Hb_006910_060 Hb_015026_130 Hb_015026_130 Hb_000836_550--Hb_015026_130 Hb_001258_110 Hb_001258_110 Hb_000836_550--Hb_001258_110 Hb_004987_020 Hb_004987_020 Hb_000836_550--Hb_004987_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.0839 31.3721 20.9684 55.1758 12.2762 59.8827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2041 17.5865 16.6426 36.3727 8.73582

CAGE analysis