Hb_002307_280

Information

Type -
Description -
Location Contig2307: 250847-261545
Sequence    

Annotation

kegg
ID pop:POPTR_0017s03970g
description POPTRDRAFT_668308; hypothetical protein
nr
ID XP_007026496.1
description Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
swissprot
ID O80560
description Type I inositol 1,4,5-trisphosphate 5-phosphatase 12 OS=Arabidopsis thaliana GN=5PTASE12 PE=1 SV=1
trembl
ID A0A061EQP2
description Endonuclease/exonuclease/phosphatase family protein isoform 3 OS=Theobroma cacao GN=TCM_021544 PE=4 SV=1
Gene Ontology
ID GO:0005515
description type i inositol -trisphosphate 5-phosphatase 12-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24259: 252400-252996
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002307_280 0.0 - - Endonuclease/exonuclease/phosphatase family protein isoform 3 [Theobroma cacao]
2 Hb_001269_140 0.0774101895 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
3 Hb_001123_050 0.0904126928 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001434_080 0.0948091925 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
5 Hb_001105_160 0.1014786842 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
6 Hb_017387_010 0.1015790115 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
7 Hb_001258_110 0.105804043 - - transporter, putative [Ricinus communis]
8 Hb_005663_110 0.106478808 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]
9 Hb_001114_110 0.1072231621 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
10 Hb_000260_660 0.1080461292 - - conserved hypothetical protein [Ricinus communis]
11 Hb_143629_100 0.1095502564 - - PREDICTED: phytochrome A [Jatropha curcas]
12 Hb_009787_050 0.1118024587 - - (Di)nucleoside polyphosphate hydrolase, putative [Ricinus communis]
13 Hb_083799_010 0.1132889679 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_003544_030 0.1136475363 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
15 Hb_005081_020 0.1139352559 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
16 Hb_012286_040 0.1151598514 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
17 Hb_000962_030 0.1157243265 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
18 Hb_049436_010 0.1157708693 - - PREDICTED: UPF0202 protein At1g10490-like [Glycine max]
19 Hb_015026_130 0.1159269233 - - quinone oxidoreductase, putative [Ricinus communis]
20 Hb_000069_120 0.1165152584 - - PREDICTED: uncharacterized protein LOC105124742 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002307_280 Hb_002307_280 Hb_001269_140 Hb_001269_140 Hb_002307_280--Hb_001269_140 Hb_001123_050 Hb_001123_050 Hb_002307_280--Hb_001123_050 Hb_001434_080 Hb_001434_080 Hb_002307_280--Hb_001434_080 Hb_001105_160 Hb_001105_160 Hb_002307_280--Hb_001105_160 Hb_017387_010 Hb_017387_010 Hb_002307_280--Hb_017387_010 Hb_001258_110 Hb_001258_110 Hb_002307_280--Hb_001258_110 Hb_001761_130 Hb_001761_130 Hb_001269_140--Hb_001761_130 Hb_005081_020 Hb_005081_020 Hb_001269_140--Hb_005081_020 Hb_001269_140--Hb_001105_160 Hb_001269_140--Hb_001434_080 Hb_001269_140--Hb_001123_050 Hb_002477_090 Hb_002477_090 Hb_001123_050--Hb_002477_090 Hb_000862_040 Hb_000862_040 Hb_001123_050--Hb_000862_040 Hb_000213_120 Hb_000213_120 Hb_001123_050--Hb_000213_120 Hb_023226_080 Hb_023226_080 Hb_001123_050--Hb_023226_080 Hb_005542_140 Hb_005542_140 Hb_001123_050--Hb_005542_140 Hb_127743_010 Hb_127743_010 Hb_001123_050--Hb_127743_010 Hb_005663_110 Hb_005663_110 Hb_001434_080--Hb_005663_110 Hb_003544_030 Hb_003544_030 Hb_001434_080--Hb_003544_030 Hb_001500_140 Hb_001500_140 Hb_001434_080--Hb_001500_140 Hb_011016_050 Hb_011016_050 Hb_001434_080--Hb_011016_050 Hb_002989_020 Hb_002989_020 Hb_001434_080--Hb_002989_020 Hb_000327_250 Hb_000327_250 Hb_001434_080--Hb_000327_250 Hb_011287_050 Hb_011287_050 Hb_001105_160--Hb_011287_050 Hb_041327_010 Hb_041327_010 Hb_001105_160--Hb_041327_010 Hb_005568_040 Hb_005568_040 Hb_001105_160--Hb_005568_040 Hb_012092_060 Hb_012092_060 Hb_001105_160--Hb_012092_060 Hb_071130_010 Hb_071130_010 Hb_001105_160--Hb_071130_010 Hb_010809_010 Hb_010809_010 Hb_001105_160--Hb_010809_010 Hb_006452_120 Hb_006452_120 Hb_017387_010--Hb_006452_120 Hb_001221_430 Hb_001221_430 Hb_017387_010--Hb_001221_430 Hb_017387_010--Hb_003544_030 Hb_000574_450 Hb_000574_450 Hb_017387_010--Hb_000574_450 Hb_017387_010--Hb_001434_080 Hb_000962_030 Hb_000962_030 Hb_017387_010--Hb_000962_030 Hb_001014_210 Hb_001014_210 Hb_001258_110--Hb_001014_210 Hb_002284_250 Hb_002284_250 Hb_001258_110--Hb_002284_250 Hb_001258_110--Hb_005663_110 Hb_000130_180 Hb_000130_180 Hb_001258_110--Hb_000130_180 Hb_015026_130 Hb_015026_130 Hb_001258_110--Hb_015026_130 Hb_001258_110--Hb_001434_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1968 0.573633 0.247781 0.577992 0.300743 0.471535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173542 0.345979 0.279558 0.699787 0.214432

CAGE analysis