Hb_035436_010

Information

Type -
Description -
Location Contig35436: 4171-4828
Sequence    

Annotation

kegg
ID pop:POPTR_0012s05350g
description POPTRDRAFT_823292; NADH2 dehydrogenase family protein
nr
ID XP_011005501.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
swissprot
ID Q94C12
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana GN=At3g18410 PE=2 SV=1
trembl
ID A9PC01
description NADH2 dehydrogenase family protein OS=Populus trichocarpa GN=POPTR_0012s05350g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36730: 4724-4946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_035436_010 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
2 Hb_054541_010 0.1377890675 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
3 Hb_013358_100 0.1493225262 - - unknown [Medicago truncatula]
4 Hb_010964_020 0.1690344162 - - RNA helicase [Arabidopsis thaliana]
5 Hb_177152_010 0.176103837 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
6 Hb_178620_010 0.1762986355 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
7 Hb_025905_020 0.1785670188 - - major allergen Pru ar 1-like [Jatropha curcas]
8 Hb_068569_010 0.1796583961 - - -
9 Hb_001518_070 0.1805561824 - - conserved hypothetical protein [Ricinus communis]
10 Hb_169505_010 0.1806061152 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
11 Hb_114079_010 0.1950258014 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
12 Hb_041025_010 0.1977518948 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
13 Hb_001623_300 0.2035612941 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
14 Hb_133724_010 0.2038381809 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000053_030 0.2102676655 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
16 Hb_040747_010 0.2105063212 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
17 Hb_002192_090 0.2115788345 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
18 Hb_001623_290 0.2130145653 - - unknown [Populus trichocarpa]
19 Hb_000033_070 0.2162304303 - - unnamed protein product [Oryza sativa Japonica Group]
20 Hb_001357_330 0.2192712365 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]

Gene co-expression network

sample Hb_035436_010 Hb_035436_010 Hb_054541_010 Hb_054541_010 Hb_035436_010--Hb_054541_010 Hb_013358_100 Hb_013358_100 Hb_035436_010--Hb_013358_100 Hb_010964_020 Hb_010964_020 Hb_035436_010--Hb_010964_020 Hb_177152_010 Hb_177152_010 Hb_035436_010--Hb_177152_010 Hb_178620_010 Hb_178620_010 Hb_035436_010--Hb_178620_010 Hb_025905_020 Hb_025905_020 Hb_035436_010--Hb_025905_020 Hb_054541_010--Hb_177152_010 Hb_054541_010--Hb_013358_100 Hb_000422_130 Hb_000422_130 Hb_054541_010--Hb_000422_130 Hb_004525_080 Hb_004525_080 Hb_054541_010--Hb_004525_080 Hb_068569_010 Hb_068569_010 Hb_054541_010--Hb_068569_010 Hb_013358_100--Hb_177152_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_065841_010 Hb_065841_010 Hb_013358_100--Hb_065841_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_010964_020--Hb_025905_020 Hb_145317_010 Hb_145317_010 Hb_177152_010--Hb_145317_010 Hb_169329_010 Hb_169329_010 Hb_177152_010--Hb_169329_010 Hb_177152_010--Hb_065841_010 Hb_177152_010--Hb_178620_010 Hb_178620_010--Hb_068569_010 Hb_178620_010--Hb_025905_020 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_178620_010--Hb_013358_100 Hb_178620_010--Hb_002192_090 Hb_134488_010 Hb_134488_010 Hb_025905_020--Hb_134488_010 Hb_114079_010 Hb_114079_010 Hb_025905_020--Hb_114079_010 Hb_041025_010 Hb_041025_010 Hb_025905_020--Hb_041025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.9422 8.08701 17.9924 51.0012 2.73982 40.682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.16353 4.48653 3.05228 1.73747 3.54982

CAGE analysis