Hb_001623_290

Information

Type -
Description -
Location Contig1623: 191352-191660
Sequence    

Annotation

kegg
ID mpp:MICPUCDRAFT_26677
description hypothetical protein
nr
ID ABK92825.1
description unknown [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9P8X2
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_290 0.0 - - unknown [Populus trichocarpa]
2 Hb_001623_300 0.0429505494 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
3 Hb_000429_250 0.0955048864 - - hypothetical protein L484_000744 [Morus notabilis]
4 Hb_112047_010 0.1250724144 - - -
5 Hb_010964_020 0.136342128 - - RNA helicase [Arabidopsis thaliana]
6 Hb_006663_090 0.1398315187 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
7 Hb_002687_080 0.1408791662 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
8 Hb_002192_090 0.1441748293 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
9 Hb_106415_010 0.1450757242 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
10 Hb_128998_010 0.1464588947 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
11 Hb_003371_170 0.1488048234 - - conserved hypothetical protein [Ricinus communis]
12 Hb_142751_010 0.1534908709 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000176_120 0.156348135 - - seryl-tRNA synthetase, putative [Ricinus communis]
14 Hb_019053_010 0.1566341886 - - -
15 Hb_000136_180 0.1571340232 - - ribosomal protein S28, putative [Ricinus communis]
16 Hb_068014_010 0.158584265 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
17 Hb_099878_050 0.1595624934 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
18 Hb_010565_010 0.1638904247 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
19 Hb_001767_120 0.1640230791 - - -
20 Hb_000825_030 0.1640488884 - - zinc binding dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001623_290 Hb_001623_290 Hb_001623_300 Hb_001623_300 Hb_001623_290--Hb_001623_300 Hb_000429_250 Hb_000429_250 Hb_001623_290--Hb_000429_250 Hb_112047_010 Hb_112047_010 Hb_001623_290--Hb_112047_010 Hb_010964_020 Hb_010964_020 Hb_001623_290--Hb_010964_020 Hb_006663_090 Hb_006663_090 Hb_001623_290--Hb_006663_090 Hb_002687_080 Hb_002687_080 Hb_001623_290--Hb_002687_080 Hb_001623_300--Hb_000429_250 Hb_001623_300--Hb_006663_090 Hb_001623_300--Hb_010964_020 Hb_106415_010 Hb_106415_010 Hb_001623_300--Hb_106415_010 Hb_142751_010 Hb_142751_010 Hb_001623_300--Hb_142751_010 Hb_000429_250--Hb_112047_010 Hb_000429_250--Hb_142751_010 Hb_128998_010 Hb_128998_010 Hb_000429_250--Hb_128998_010 Hb_001767_120 Hb_001767_120 Hb_000429_250--Hb_001767_120 Hb_112047_010--Hb_128998_010 Hb_112047_010--Hb_001623_300 Hb_000327_290 Hb_000327_290 Hb_112047_010--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_112047_010--Hb_000136_180 Hb_178620_010 Hb_178620_010 Hb_010964_020--Hb_178620_010 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_025905_020 Hb_025905_020 Hb_010964_020--Hb_025905_020 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_068014_010 Hb_068014_010 Hb_006663_090--Hb_068014_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_005679_070 Hb_005679_070 Hb_006663_090--Hb_005679_070 Hb_000416_070 Hb_000416_070 Hb_002687_080--Hb_000416_070 Hb_140291_010 Hb_140291_010 Hb_002687_080--Hb_140291_010 Hb_152554_010 Hb_152554_010 Hb_002687_080--Hb_152554_010 Hb_099878_050 Hb_099878_050 Hb_002687_080--Hb_099878_050 Hb_002687_080--Hb_000327_290 Hb_002687_080--Hb_000136_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.112 46.9441 108.171 345.285 83.3908 565.532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.7262 108.701 65.4905 58.5493 24.226

CAGE analysis