Hb_112047_010

Information

Type -
Description -
Location Contig112047: 1107-1851
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112047_010 0.0 - - -
2 Hb_128998_010 0.1203367257 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
3 Hb_000429_250 0.1214445439 - - hypothetical protein L484_000744 [Morus notabilis]
4 Hb_001623_290 0.1250724144 - - unknown [Populus trichocarpa]
5 Hb_001623_300 0.1367603924 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
6 Hb_000327_290 0.1449089631 - - Histone H4 [Triticum urartu]
7 Hb_000136_180 0.1490920277 - - ribosomal protein S28, putative [Ricinus communis]
8 Hb_003371_170 0.1535462397 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010504_030 0.1638163801 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
10 Hb_002192_090 0.1654430349 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
11 Hb_007188_020 0.1671985223 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
12 Hb_000015_070 0.168077987 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
13 Hb_002084_010 0.1701940687 - - hypothetical protein VITISV_017990 [Vitis vinifera]
14 Hb_006663_090 0.1725340816 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
15 Hb_000007_460 0.1803697222 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
16 Hb_002687_080 0.1814299019 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
17 Hb_183557_010 0.1826310602 - - hypothetical protein JCGZ_24847 [Jatropha curcas]
18 Hb_133724_010 0.1827929977 - - conserved hypothetical protein [Ricinus communis]
19 Hb_076875_020 0.1860223322 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_108227_010 0.1934163016 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]

Gene co-expression network

sample Hb_112047_010 Hb_112047_010 Hb_128998_010 Hb_128998_010 Hb_112047_010--Hb_128998_010 Hb_000429_250 Hb_000429_250 Hb_112047_010--Hb_000429_250 Hb_001623_290 Hb_001623_290 Hb_112047_010--Hb_001623_290 Hb_001623_300 Hb_001623_300 Hb_112047_010--Hb_001623_300 Hb_000327_290 Hb_000327_290 Hb_112047_010--Hb_000327_290 Hb_000136_180 Hb_000136_180 Hb_112047_010--Hb_000136_180 Hb_010504_030 Hb_010504_030 Hb_128998_010--Hb_010504_030 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_128998_010--Hb_000429_250 Hb_000007_460 Hb_000007_460 Hb_128998_010--Hb_000007_460 Hb_001767_120 Hb_001767_120 Hb_128998_010--Hb_001767_120 Hb_000429_250--Hb_001623_300 Hb_000429_250--Hb_001623_290 Hb_142751_010 Hb_142751_010 Hb_000429_250--Hb_142751_010 Hb_000429_250--Hb_001767_120 Hb_001623_290--Hb_001623_300 Hb_010964_020 Hb_010964_020 Hb_001623_290--Hb_010964_020 Hb_001623_290--Hb_006663_090 Hb_002687_080 Hb_002687_080 Hb_001623_290--Hb_002687_080 Hb_001623_300--Hb_006663_090 Hb_001623_300--Hb_010964_020 Hb_106415_010 Hb_106415_010 Hb_001623_300--Hb_106415_010 Hb_001623_300--Hb_142751_010 Hb_000327_290--Hb_010504_030 Hb_000327_290--Hb_002687_080 Hb_007123_060 Hb_007123_060 Hb_000327_290--Hb_007123_060 Hb_082407_010 Hb_082407_010 Hb_000327_290--Hb_082407_010 Hb_136731_010 Hb_136731_010 Hb_000327_290--Hb_136731_010 Hb_007188_020 Hb_007188_020 Hb_000136_180--Hb_007188_020 Hb_000136_180--Hb_002687_080 Hb_000015_070 Hb_000015_070 Hb_000136_180--Hb_000015_070 Hb_076875_020 Hb_076875_020 Hb_000136_180--Hb_076875_020 Hb_000136_180--Hb_001623_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75813 3.46216 4.36545 11.2682 1.7276 22.9369
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.98742 7.13615 2.18467 1.39862 0.774763

CAGE analysis