Hb_003455_010

Information

Type -
Description -
Location Contig3455: 26025-27763
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14040g
description POPTRDRAFT_557049; hypothetical protein
nr
ID XP_002312943.2
description hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
swissprot
ID Q9LU89
description Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform OS=Arabidopsis thaliana GN=B'ETA PE=2 SV=1
trembl
ID B9HR26
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s14040g PE=4 SV=2
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b beta isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003455_010 0.0 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
2 Hb_002267_120 0.2064771022 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
3 Hb_006971_080 0.2152061011 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_004770_060 0.243163144 - - unnamed protein product, partial [Coffea canephora]
5 Hb_005854_050 0.2513913305 - - conserved hypothetical protein [Ricinus communis]
6 Hb_030885_020 0.2557592639 - - -
7 Hb_082960_020 0.2558772767 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
8 Hb_005597_010 0.2618961617 - - -
9 Hb_099448_010 0.2657126551 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_008226_110 0.2674716276 - - uncharacterized protein LOC100501343 [Zea mays]
11 Hb_169630_010 0.2676424547 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
12 Hb_001975_170 0.2939606853 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Nelumbo nucifera]
13 Hb_000967_070 0.293969212 - - rubber peroxidase 1 [Hevea brasiliensis]
14 Hb_007017_130 0.2939723175 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
15 Hb_004634_010 0.2940135361 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]
16 Hb_003589_040 0.2941755225 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
17 Hb_004375_040 0.2942191353 - - hypothetical protein JCGZ_13965 [Jatropha curcas]
18 Hb_000108_010 0.2942193613 - - hypothetical protein POPTR_0016s06140g, partial [Populus trichocarpa]
19 Hb_099777_010 0.2942303299 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
20 Hb_150263_030 0.2944637724 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003455_010 Hb_003455_010 Hb_002267_120 Hb_002267_120 Hb_003455_010--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_003455_010--Hb_006971_080 Hb_004770_060 Hb_004770_060 Hb_003455_010--Hb_004770_060 Hb_005854_050 Hb_005854_050 Hb_003455_010--Hb_005854_050 Hb_030885_020 Hb_030885_020 Hb_003455_010--Hb_030885_020 Hb_082960_020 Hb_082960_020 Hb_003455_010--Hb_082960_020 Hb_002267_120--Hb_006971_080 Hb_008226_110 Hb_008226_110 Hb_002267_120--Hb_008226_110 Hb_005392_100 Hb_005392_100 Hb_002267_120--Hb_005392_100 Hb_147355_030 Hb_147355_030 Hb_002267_120--Hb_147355_030 Hb_002267_120--Hb_082960_020 Hb_006971_080--Hb_008226_110 Hb_006971_080--Hb_005392_100 Hb_006971_080--Hb_147355_030 Hb_006971_080--Hb_082960_020 Hb_002942_180 Hb_002942_180 Hb_006971_080--Hb_002942_180 Hb_004770_060--Hb_030885_020 Hb_020532_010 Hb_020532_010 Hb_004770_060--Hb_020532_010 Hb_169630_010 Hb_169630_010 Hb_004770_060--Hb_169630_010 Hb_004770_060--Hb_002942_180 Hb_005597_010 Hb_005597_010 Hb_004770_060--Hb_005597_010 Hb_004033_020 Hb_004033_020 Hb_005854_050--Hb_004033_020 Hb_121694_010 Hb_121694_010 Hb_005854_050--Hb_121694_010 Hb_000011_380 Hb_000011_380 Hb_005854_050--Hb_000011_380 Hb_034280_010 Hb_034280_010 Hb_005854_050--Hb_034280_010 Hb_014096_010 Hb_014096_010 Hb_005854_050--Hb_014096_010 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_030885_020--Hb_005597_010 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_030885_020--Hb_020532_010 Hb_113803_010 Hb_113803_010 Hb_082960_020--Hb_113803_010 Hb_082960_020--Hb_147355_030 Hb_082960_020--Hb_008226_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0460665 0 0.0130729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0213543 0

CAGE analysis