Hb_004770_060

Information

Type -
Description -
Location Contig4770: 119937-121763
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011205mg
description hypothetical protein
nr
ID CDP21877.1
description unnamed protein product, partial [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068VMN1
description Coffea canephora DH200=94 genomic scaffold, scaffold_7418 (Fragment) OS=Coffea canephora GN=GSCOC_T00005233001 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004770_060 0.0 - - unnamed protein product, partial [Coffea canephora]
2 Hb_030885_020 0.2139324791 - - -
3 Hb_020532_010 0.2389571565 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
4 Hb_169630_010 0.242306762 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
5 Hb_003455_010 0.243163144 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
6 Hb_002942_180 0.2638370686 - - phosphate transporter [Manihot esculenta]
7 Hb_005597_010 0.2726286255 - - -
8 Hb_001379_070 0.2824401244 - - hypothetical protein JCGZ_16377 [Jatropha curcas]
9 Hb_000953_120 0.2857560497 - - -
10 Hb_060585_010 0.2875736296 - - unnamed protein product [Coffea canephora]
11 Hb_131652_010 0.2951219982 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
12 Hb_082960_020 0.2978042522 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
13 Hb_006971_080 0.3020614294 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_002267_120 0.305636845 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
15 Hb_000098_300 0.3107692532 - - -
16 Hb_022891_010 0.3117009849 - - chitinase-like protein [Hevea brasiliensis]
17 Hb_005854_050 0.3123027496 - - conserved hypothetical protein [Ricinus communis]
18 Hb_099990_020 0.3142388156 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
19 Hb_000270_540 0.3159583974 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
20 Hb_008226_110 0.3167513219 - - uncharacterized protein LOC100501343 [Zea mays]

Gene co-expression network

sample Hb_004770_060 Hb_004770_060 Hb_030885_020 Hb_030885_020 Hb_004770_060--Hb_030885_020 Hb_020532_010 Hb_020532_010 Hb_004770_060--Hb_020532_010 Hb_169630_010 Hb_169630_010 Hb_004770_060--Hb_169630_010 Hb_003455_010 Hb_003455_010 Hb_004770_060--Hb_003455_010 Hb_002942_180 Hb_002942_180 Hb_004770_060--Hb_002942_180 Hb_005597_010 Hb_005597_010 Hb_004770_060--Hb_005597_010 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_030885_020--Hb_005597_010 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_030885_020--Hb_020532_010 Hb_020532_010--Hb_002942_180 Hb_094132_010 Hb_094132_010 Hb_020532_010--Hb_094132_010 Hb_103093_010 Hb_103093_010 Hb_020532_010--Hb_103093_010 Hb_000193_030 Hb_000193_030 Hb_020532_010--Hb_000193_030 Hb_021068_030 Hb_021068_030 Hb_020532_010--Hb_021068_030 Hb_169630_010--Hb_003455_010 Hb_169630_010--Hb_030885_020 Hb_172572_010 Hb_172572_010 Hb_169630_010--Hb_172572_010 Hb_169630_010--Hb_020532_010 Hb_002820_130 Hb_002820_130 Hb_169630_010--Hb_002820_130 Hb_002267_120 Hb_002267_120 Hb_003455_010--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_003455_010--Hb_006971_080 Hb_005854_050 Hb_005854_050 Hb_003455_010--Hb_005854_050 Hb_003455_010--Hb_030885_020 Hb_082960_020 Hb_082960_020 Hb_003455_010--Hb_082960_020 Hb_008226_110 Hb_008226_110 Hb_002942_180--Hb_008226_110 Hb_131652_010 Hb_131652_010 Hb_002942_180--Hb_131652_010 Hb_002942_180--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_002942_180--Hb_005392_100 Hb_002942_180--Hb_002267_120 Hb_000640_110 Hb_000640_110 Hb_005597_010--Hb_000640_110 Hb_004242_210 Hb_004242_210 Hb_005597_010--Hb_004242_210 Hb_005597_010--Hb_003455_010 Hb_000416_120 Hb_000416_120 Hb_005597_010--Hb_000416_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.083295 0 0.070424 2.73268 0.247206 1.91196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.1946 0

CAGE analysis