Hb_008226_110

Information

Type -
Description -
Location Contig8226: 64654-70219
Sequence    

Annotation

kegg
ID zma:100501343
description uncharacterized LOC100501343
nr
ID NP_001183021.1
description uncharacterized protein LOC100501343 [Zea mays]
swissprot
ID -
description -
trembl
ID C4J2P6
description Uncharacterized protein OS=Zea mays PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008226_110 0.0 - - uncharacterized protein LOC100501343 [Zea mays]
2 Hb_006971_080 0.0642738511 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_005392_100 0.0748586312 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
4 Hb_002267_120 0.0823704144 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
5 Hb_002942_180 0.1792961153 - - phosphate transporter [Manihot esculenta]
6 Hb_147355_030 0.195084004 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
7 Hb_131652_010 0.2364757611 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
8 Hb_082960_020 0.2383900122 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
9 Hb_003455_010 0.2674716276 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
10 Hb_113803_010 0.2729243227 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000565_010 0.2781888693 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
12 Hb_005597_010 0.3093220994 - - -
13 Hb_001104_090 0.3136136879 - - hypothetical protein B456_009G408400 [Gossypium raimondii]
14 Hb_004770_060 0.3167513219 - - unnamed protein product, partial [Coffea canephora]
15 Hb_022819_010 0.3207045217 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_099448_010 0.3270198838 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
17 Hb_001652_070 0.3316593541 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
18 Hb_000416_120 0.3367930491 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
19 Hb_020532_010 0.3403914814 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
20 Hb_033044_010 0.3447963407 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5-like isoform X3 [Gossypium raimondii]

Gene co-expression network

sample Hb_008226_110 Hb_008226_110 Hb_006971_080 Hb_006971_080 Hb_008226_110--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_008226_110--Hb_005392_100 Hb_002267_120 Hb_002267_120 Hb_008226_110--Hb_002267_120 Hb_002942_180 Hb_002942_180 Hb_008226_110--Hb_002942_180 Hb_147355_030 Hb_147355_030 Hb_008226_110--Hb_147355_030 Hb_131652_010 Hb_131652_010 Hb_008226_110--Hb_131652_010 Hb_006971_080--Hb_002267_120 Hb_006971_080--Hb_005392_100 Hb_006971_080--Hb_147355_030 Hb_082960_020 Hb_082960_020 Hb_006971_080--Hb_082960_020 Hb_006971_080--Hb_002942_180 Hb_005392_100--Hb_002267_120 Hb_005392_100--Hb_147355_030 Hb_005392_100--Hb_002942_180 Hb_005392_100--Hb_131652_010 Hb_002267_120--Hb_147355_030 Hb_002267_120--Hb_082960_020 Hb_003455_010 Hb_003455_010 Hb_002267_120--Hb_003455_010 Hb_020532_010 Hb_020532_010 Hb_002942_180--Hb_020532_010 Hb_002942_180--Hb_131652_010 Hb_002942_180--Hb_002267_120 Hb_113803_010 Hb_113803_010 Hb_147355_030--Hb_113803_010 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_011206_020 Hb_011206_020 Hb_131652_010--Hb_011206_020 Hb_000098_300 Hb_000098_300 Hb_131652_010--Hb_000098_300 Hb_131652_010--Hb_006971_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0393808 0 0.0351368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0729403 0

CAGE analysis