Hb_082960_020

Information

Type -
Description -
Location Contig82960: 12435-13959
Sequence    

Annotation

kegg
ID sly:101252473
description aldo-keto reductase family 4 member C10
nr
ID KJB76788.1
description hypothetical protein B456_012G107300 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TMB5
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G107300 PE=4 SV=1
Gene Ontology
ID GO:0005829
description aldo-keto reductase family 4 member c9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_082960_020 0.0 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
2 Hb_002267_120 0.1950401214 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
3 Hb_006971_080 0.2035001427 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_113803_010 0.2296596185 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_147355_030 0.2296760749 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
6 Hb_008226_110 0.2383900122 - - uncharacterized protein LOC100501343 [Zea mays]
7 Hb_003455_010 0.2558772767 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
8 Hb_118707_010 0.2646510729 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
9 Hb_176012_010 0.2650208717 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005392_100 0.2726326058 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
11 Hb_004770_060 0.2978042522 - - unnamed protein product, partial [Coffea canephora]
12 Hb_136872_010 0.2997795093 - - serine/threonine-specific receptor protein kinase, putative [Ricinus communis]
13 Hb_004607_010 0.3021400478 - - -
14 Hb_173741_010 0.3023204275 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
15 Hb_001357_370 0.3026986716 - - -
16 Hb_004968_110 0.3031481407 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
17 Hb_000023_040 0.3032945905 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000248_090 0.3041814943 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
19 Hb_007227_010 0.3042575876 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
20 Hb_005714_080 0.3047890943 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]

Gene co-expression network

sample Hb_082960_020 Hb_082960_020 Hb_002267_120 Hb_002267_120 Hb_082960_020--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_082960_020--Hb_006971_080 Hb_113803_010 Hb_113803_010 Hb_082960_020--Hb_113803_010 Hb_147355_030 Hb_147355_030 Hb_082960_020--Hb_147355_030 Hb_008226_110 Hb_008226_110 Hb_082960_020--Hb_008226_110 Hb_003455_010 Hb_003455_010 Hb_082960_020--Hb_003455_010 Hb_002267_120--Hb_006971_080 Hb_002267_120--Hb_008226_110 Hb_005392_100 Hb_005392_100 Hb_002267_120--Hb_005392_100 Hb_002267_120--Hb_147355_030 Hb_002267_120--Hb_003455_010 Hb_006971_080--Hb_008226_110 Hb_006971_080--Hb_005392_100 Hb_006971_080--Hb_147355_030 Hb_002942_180 Hb_002942_180 Hb_006971_080--Hb_002942_180 Hb_113803_010--Hb_147355_030 Hb_005656_110 Hb_005656_110 Hb_113803_010--Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_113803_010--Hb_000248_090 Hb_003938_220 Hb_003938_220 Hb_113803_010--Hb_003938_220 Hb_002903_030 Hb_002903_030 Hb_113803_010--Hb_002903_030 Hb_004607_010 Hb_004607_010 Hb_113803_010--Hb_004607_010 Hb_147355_030--Hb_005392_100 Hb_147355_030--Hb_008226_110 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_008226_110--Hb_005392_100 Hb_008226_110--Hb_002942_180 Hb_131652_010 Hb_131652_010 Hb_008226_110--Hb_131652_010 Hb_003455_010--Hb_006971_080 Hb_004770_060 Hb_004770_060 Hb_003455_010--Hb_004770_060 Hb_005854_050 Hb_005854_050 Hb_003455_010--Hb_005854_050 Hb_030885_020 Hb_030885_020 Hb_003455_010--Hb_030885_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.292916 0.0474035 0.0837425
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.343298 0

CAGE analysis