Hb_005392_100

Information

Type -
Description -
Location Contig5392: 144036-148642
Sequence    

Annotation

kegg
ID tcc:TCM_038736
description hypothetical protein
nr
ID XP_007014066.1
description Uncharacterized protein TCM_038736 [Theobroma cacao]
swissprot
ID P92523
description Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
trembl
ID A0A061GPE8
description Uncharacterized protein OS=Theobroma cacao GN=TCM_038736 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005392_100 0.0 - - Uncharacterized protein TCM_038736 [Theobroma cacao]
2 Hb_008226_110 0.0748586312 - - uncharacterized protein LOC100501343 [Zea mays]
3 Hb_006971_080 0.1284865799 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_002267_120 0.1423250003 - - hypothetical protein B456_009G136300 [Gossypium raimondii]
5 Hb_147355_030 0.1884747897 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
6 Hb_002942_180 0.2166277416 - - phosphate transporter [Manihot esculenta]
7 Hb_131652_010 0.2512467678 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
8 Hb_082960_020 0.2726326058 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
9 Hb_000565_010 0.2752865587 - - hypothetical protein JCGZ_03337 [Jatropha curcas]
10 Hb_001104_090 0.2762376985 - - hypothetical protein B456_009G408400 [Gossypium raimondii]
11 Hb_113803_010 0.2920022967 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_022819_010 0.3114538348 - - Disease resistance protein RPS5, putative [Ricinus communis]
13 Hb_003549_070 0.3218735724 - - -
14 Hb_004908_010 0.3266363459 - - PREDICTED: uncharacterized protein LOC105646856 [Jatropha curcas]
15 Hb_004894_010 0.3297808337 - - -
16 Hb_031862_280 0.3335504281 - - hypothetical protein VITISV_012289 [Vitis vinifera]
17 Hb_001652_070 0.3348749047 - - PREDICTED: uncharacterized protein LOC103439285 [Malus domestica]
18 Hb_002595_020 0.3365962104 - - PREDICTED: class I heat shock protein, partial [Nicotiana sylvestris]
19 Hb_003455_010 0.3375665158 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
20 Hb_170935_010 0.3383636019 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 [Setaria italica]

Gene co-expression network

sample Hb_005392_100 Hb_005392_100 Hb_008226_110 Hb_008226_110 Hb_005392_100--Hb_008226_110 Hb_006971_080 Hb_006971_080 Hb_005392_100--Hb_006971_080 Hb_002267_120 Hb_002267_120 Hb_005392_100--Hb_002267_120 Hb_147355_030 Hb_147355_030 Hb_005392_100--Hb_147355_030 Hb_002942_180 Hb_002942_180 Hb_005392_100--Hb_002942_180 Hb_131652_010 Hb_131652_010 Hb_005392_100--Hb_131652_010 Hb_008226_110--Hb_006971_080 Hb_008226_110--Hb_002267_120 Hb_008226_110--Hb_002942_180 Hb_008226_110--Hb_147355_030 Hb_008226_110--Hb_131652_010 Hb_006971_080--Hb_002267_120 Hb_006971_080--Hb_147355_030 Hb_082960_020 Hb_082960_020 Hb_006971_080--Hb_082960_020 Hb_006971_080--Hb_002942_180 Hb_002267_120--Hb_147355_030 Hb_002267_120--Hb_082960_020 Hb_003455_010 Hb_003455_010 Hb_002267_120--Hb_003455_010 Hb_113803_010 Hb_113803_010 Hb_147355_030--Hb_113803_010 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_020532_010 Hb_020532_010 Hb_002942_180--Hb_020532_010 Hb_002942_180--Hb_131652_010 Hb_002942_180--Hb_002267_120 Hb_011206_020 Hb_011206_020 Hb_131652_010--Hb_011206_020 Hb_000098_300 Hb_000098_300 Hb_131652_010--Hb_000098_300 Hb_131652_010--Hb_006971_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00374839 0 0.00443824
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0107753 0

CAGE analysis