Hb_113803_010

Information

Type -
Description -
Location Contig113803: 2366-2692
Sequence    

Annotation

kegg
ID rcu:RCOM_1494390
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_002516045.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9ZUE0
description Proline-rich receptor-like protein kinase PERK12 OS=Arabidopsis thaliana GN=PERK12 PE=2 SV=2
trembl
ID B9RQM6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494390 PE=3 SV=1
Gene Ontology
ID GO:0009536
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_113803_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_147355_030 0.1270745369 - - PREDICTED: putative disease resistance protein RGA3 isoform X5 [Populus euphratica]
3 Hb_005656_110 0.1280269354 - - cytochrome P450, putative [Ricinus communis]
4 Hb_000248_090 0.1285011174 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
5 Hb_003938_220 0.1286779062 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_002903_030 0.1340019745 - - polyphenol oxidase [Cydonia oblonga]
7 Hb_004607_010 0.1341661418 - - -
8 Hb_186115_010 0.1374548658 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_146361_020 0.1380473061 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
10 Hb_001862_020 0.1433871015 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
11 Hb_003407_020 0.1453962512 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
12 Hb_001357_370 0.145751223 - - -
13 Hb_004968_110 0.1487794006 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
14 Hb_000023_040 0.1496622453 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_176232_040 0.1537976143 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007227_010 0.15475961 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
17 Hb_005714_080 0.1572329406 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
18 Hb_052135_010 0.1582590282 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
19 Hb_170365_010 0.1583171319 - - Retrotransposon protein, putative [Theobroma cacao]
20 Hb_183433_020 0.1586675997 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]

Gene co-expression network

sample Hb_113803_010 Hb_113803_010 Hb_147355_030 Hb_147355_030 Hb_113803_010--Hb_147355_030 Hb_005656_110 Hb_005656_110 Hb_113803_010--Hb_005656_110 Hb_000248_090 Hb_000248_090 Hb_113803_010--Hb_000248_090 Hb_003938_220 Hb_003938_220 Hb_113803_010--Hb_003938_220 Hb_002903_030 Hb_002903_030 Hb_113803_010--Hb_002903_030 Hb_004607_010 Hb_004607_010 Hb_113803_010--Hb_004607_010 Hb_002267_120 Hb_002267_120 Hb_147355_030--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_147355_030--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_147355_030--Hb_005392_100 Hb_008226_110 Hb_008226_110 Hb_147355_030--Hb_008226_110 Hb_012355_010 Hb_012355_010 Hb_147355_030--Hb_012355_010 Hb_005656_110--Hb_000248_090 Hb_005656_110--Hb_003938_220 Hb_005656_110--Hb_004607_010 Hb_005656_110--Hb_002903_030 Hb_186115_010 Hb_186115_010 Hb_005656_110--Hb_186115_010 Hb_146361_020 Hb_146361_020 Hb_005656_110--Hb_146361_020 Hb_000248_090--Hb_003938_220 Hb_000248_090--Hb_004607_010 Hb_000248_090--Hb_002903_030 Hb_001357_370 Hb_001357_370 Hb_000248_090--Hb_001357_370 Hb_000248_090--Hb_186115_010 Hb_003938_220--Hb_002903_030 Hb_003938_220--Hb_186115_010 Hb_003938_220--Hb_146361_020 Hb_001862_020 Hb_001862_020 Hb_003938_220--Hb_001862_020 Hb_002903_030--Hb_186115_010 Hb_002903_030--Hb_146361_020 Hb_002903_030--Hb_001862_020 Hb_003407_020 Hb_003407_020 Hb_002903_030--Hb_003407_020 Hb_004607_010--Hb_001357_370 Hb_004968_110 Hb_004968_110 Hb_004607_010--Hb_004968_110 Hb_000023_040 Hb_000023_040 Hb_004607_010--Hb_000023_040 Hb_007227_010 Hb_007227_010 Hb_004607_010--Hb_007227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 7.78074 0 0.646174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.5203 0

CAGE analysis