Hb_005854_050

Information

Type -
Description -
Location Contig5854: 68182-68451
Sequence    

Annotation

kegg
ID rcu:RCOM_1202720
description hypothetical protein
nr
ID XP_002531342.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1202720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49967: 63720-67863
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005854_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004033_020 0.2062941021 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
3 Hb_121694_010 0.2262437679 - - structural constituent of ribosome, putative [Ricinus communis]
4 Hb_000011_380 0.2362780951 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT1.6 [Jatropha curcas]
5 Hb_034280_010 0.2426078137 - - Protein bem46, putative [Ricinus communis]
6 Hb_014096_010 0.2490825161 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_003455_010 0.2513913305 - - hypothetical protein POPTR_0009s14040g [Populus trichocarpa]
8 Hb_000416_120 0.2571756333 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
9 Hb_003972_040 0.2591096574 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
10 Hb_000959_150 0.2601531543 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
11 Hb_002400_480 0.2612484599 - - PREDICTED: uncharacterized protein LOC105637596 [Jatropha curcas]
12 Hb_001379_070 0.2635655568 - - hypothetical protein JCGZ_16377 [Jatropha curcas]
13 Hb_173741_010 0.2638311945 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
14 Hb_000046_250 0.2676512966 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005529_020 0.2688034991 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 32 [Jatropha curcas]
16 Hb_004125_070 0.2688357768 - - Glycolipid transfer protein, putative [Ricinus communis]
17 Hb_001195_670 0.2717627269 - - PREDICTED: pathogenesis-related protein 5 [Jatropha curcas]
18 Hb_001115_010 0.2734097864 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
19 Hb_030088_010 0.2762556791 - - basic blue copper family protein [Populus trichocarpa]
20 Hb_000028_620 0.2776017892 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005854_050 Hb_005854_050 Hb_004033_020 Hb_004033_020 Hb_005854_050--Hb_004033_020 Hb_121694_010 Hb_121694_010 Hb_005854_050--Hb_121694_010 Hb_000011_380 Hb_000011_380 Hb_005854_050--Hb_000011_380 Hb_034280_010 Hb_034280_010 Hb_005854_050--Hb_034280_010 Hb_014096_010 Hb_014096_010 Hb_005854_050--Hb_014096_010 Hb_003455_010 Hb_003455_010 Hb_005854_050--Hb_003455_010 Hb_004125_070 Hb_004125_070 Hb_004033_020--Hb_004125_070 Hb_184541_010 Hb_184541_010 Hb_004033_020--Hb_184541_010 Hb_000251_020 Hb_000251_020 Hb_004033_020--Hb_000251_020 Hb_009083_030 Hb_009083_030 Hb_004033_020--Hb_009083_030 Hb_004033_020--Hb_121694_010 Hb_121694_010--Hb_009083_030 Hb_121694_010--Hb_184541_010 Hb_047691_010 Hb_047691_010 Hb_121694_010--Hb_047691_010 Hb_010984_040 Hb_010984_040 Hb_121694_010--Hb_010984_040 Hb_121694_010--Hb_004125_070 Hb_001059_140 Hb_001059_140 Hb_121694_010--Hb_001059_140 Hb_007161_020 Hb_007161_020 Hb_000011_380--Hb_007161_020 Hb_039096_010 Hb_039096_010 Hb_000011_380--Hb_039096_010 Hb_113945_010 Hb_113945_010 Hb_000011_380--Hb_113945_010 Hb_000749_160 Hb_000749_160 Hb_000011_380--Hb_000749_160 Hb_000429_030 Hb_000429_030 Hb_000011_380--Hb_000429_030 Hb_000106_060 Hb_000106_060 Hb_000011_380--Hb_000106_060 Hb_003972_040 Hb_003972_040 Hb_034280_010--Hb_003972_040 Hb_032208_050 Hb_032208_050 Hb_034280_010--Hb_032208_050 Hb_003050_100 Hb_003050_100 Hb_034280_010--Hb_003050_100 Hb_000032_430 Hb_000032_430 Hb_034280_010--Hb_000032_430 Hb_028115_010 Hb_028115_010 Hb_034280_010--Hb_028115_010 Hb_000110_380 Hb_000110_380 Hb_034280_010--Hb_000110_380 Hb_001091_010 Hb_001091_010 Hb_014096_010--Hb_001091_010 Hb_004397_010 Hb_004397_010 Hb_014096_010--Hb_004397_010 Hb_000959_150 Hb_000959_150 Hb_014096_010--Hb_000959_150 Hb_082733_010 Hb_082733_010 Hb_014096_010--Hb_082733_010 Hb_059226_020 Hb_059226_020 Hb_014096_010--Hb_059226_020 Hb_004031_060 Hb_004031_060 Hb_014096_010--Hb_004031_060 Hb_002267_120 Hb_002267_120 Hb_003455_010--Hb_002267_120 Hb_006971_080 Hb_006971_080 Hb_003455_010--Hb_006971_080 Hb_004770_060 Hb_004770_060 Hb_003455_010--Hb_004770_060 Hb_030885_020 Hb_030885_020 Hb_003455_010--Hb_030885_020 Hb_082960_020 Hb_082960_020 Hb_003455_010--Hb_082960_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.44043 1.24999 4.13982 116.581 2.13753 16.4429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9732 2.35523 0.525418 48.2326 4.532

CAGE analysis