Hb_004397_010

Information

Type -
Description -
Location Contig4397: 6909-7294
Sequence    

Annotation

kegg
ID rcu:RCOM_0091750
description Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)
nr
ID XP_002526749.1
description Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
swissprot
ID Q9FL51
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1
trembl
ID B9SL80
description Receptor protein kinase CLAVATA1, putative OS=Ricinus communis GN=RCOM_0091750 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probably inactive leucine-rich repeat receptor-like protein kinase at5g06940

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004397_010 0.0 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
2 Hb_059226_020 0.0927669526 - - hypothetical protein B456_008G287700 [Gossypium raimondii]
3 Hb_120357_010 0.1204148347 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_162815_010 0.1219903985 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_006351_040 0.1248302829 - - conserved hypothetical protein [Ricinus communis]
6 Hb_030088_010 0.1251846687 - - basic blue copper family protein [Populus trichocarpa]
7 Hb_066207_020 0.1298767621 - - hypothetical protein JCGZ_22048 [Jatropha curcas]
8 Hb_014096_010 0.1343344455 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
9 Hb_082733_010 0.1354828873 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
10 Hb_081191_010 0.1356189634 - - PREDICTED: pathogenesis-related protein PR-1-like [Jatropha curcas]
11 Hb_170861_010 0.1368750813 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
12 Hb_000327_100 0.1372643953 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
13 Hb_001863_520 0.1390397504 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001091_040 0.1408822982 - - hypothetical protein JCGZ_01204 [Jatropha curcas]
15 Hb_009615_030 0.1475277693 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000352_360 0.1495544441 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
17 Hb_000561_040 0.1512649099 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
18 Hb_113945_010 0.1517947267 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
19 Hb_110631_010 0.1522480011 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
20 Hb_039946_040 0.1527344674 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]

Gene co-expression network

sample Hb_004397_010 Hb_004397_010 Hb_059226_020 Hb_059226_020 Hb_004397_010--Hb_059226_020 Hb_120357_010 Hb_120357_010 Hb_004397_010--Hb_120357_010 Hb_162815_010 Hb_162815_010 Hb_004397_010--Hb_162815_010 Hb_006351_040 Hb_006351_040 Hb_004397_010--Hb_006351_040 Hb_030088_010 Hb_030088_010 Hb_004397_010--Hb_030088_010 Hb_066207_020 Hb_066207_020 Hb_004397_010--Hb_066207_020 Hb_039946_040 Hb_039946_040 Hb_059226_020--Hb_039946_040 Hb_082733_010 Hb_082733_010 Hb_059226_020--Hb_082733_010 Hb_059226_020--Hb_066207_020 Hb_059226_020--Hb_030088_010 Hb_004330_060 Hb_004330_060 Hb_059226_020--Hb_004330_060 Hb_000561_040 Hb_000561_040 Hb_120357_010--Hb_000561_040 Hb_049438_020 Hb_049438_020 Hb_120357_010--Hb_049438_020 Hb_170861_010 Hb_170861_010 Hb_120357_010--Hb_170861_010 Hb_113945_010 Hb_113945_010 Hb_120357_010--Hb_113945_010 Hb_000934_180 Hb_000934_180 Hb_120357_010--Hb_000934_180 Hb_001863_520 Hb_001863_520 Hb_162815_010--Hb_001863_520 Hb_162815_010--Hb_030088_010 Hb_162815_010--Hb_049438_020 Hb_001856_260 Hb_001856_260 Hb_162815_010--Hb_001856_260 Hb_162815_010--Hb_120357_010 Hb_001091_040 Hb_001091_040 Hb_006351_040--Hb_001091_040 Hb_006351_040--Hb_039946_040 Hb_000139_460 Hb_000139_460 Hb_006351_040--Hb_000139_460 Hb_000086_510 Hb_000086_510 Hb_006351_040--Hb_000086_510 Hb_019299_020 Hb_019299_020 Hb_006351_040--Hb_019299_020 Hb_005144_140 Hb_005144_140 Hb_030088_010--Hb_005144_140 Hb_000917_070 Hb_000917_070 Hb_030088_010--Hb_000917_070 Hb_030088_010--Hb_001091_040 Hb_030088_010--Hb_039946_040 Hb_000015_140 Hb_000015_140 Hb_066207_020--Hb_000015_140 Hb_000740_080 Hb_000740_080 Hb_066207_020--Hb_000740_080 Hb_000897_010 Hb_000897_010 Hb_066207_020--Hb_000897_010 Hb_004926_010 Hb_004926_010 Hb_066207_020--Hb_004926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.929583 2.55116 25.3537 0.103052 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.50846 1.3651

CAGE analysis