Hb_010984_040

Information

Type -
Description -
Location Contig10984: 86166-87029
Sequence    

Annotation

kegg
ID brp:103855810
description translation factor GUF1 homolog, chloroplastic-like
nr
ID EPS57530.1
description hypothetical protein M569_17286, partial [Genlisea aurea]
swissprot
ID P26843
description Elongation factor 4 (Fragment) OS=Pseudomonas fluorescens GN=lepA PE=3 SV=1
trembl
ID S8BSH3
description Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_17286 PE=4 SV=1
Gene Ontology
ID GO:0005743
description translation factor guf1 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010984_040 0.0 - - hypothetical protein M569_17286, partial [Genlisea aurea]
2 Hb_004525_050 0.151252423 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
3 Hb_100137_010 0.1565909018 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
4 Hb_006634_110 0.1719893774 - - BnaC04g40780D [Brassica napus]
5 Hb_009083_030 0.1727383349 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
6 Hb_048702_010 0.1735545724 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
7 Hb_121694_010 0.1742084219 - - structural constituent of ribosome, putative [Ricinus communis]
8 Hb_000603_070 0.1770075184 - - -
9 Hb_099116_010 0.1858541698 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002498_260 0.1869959517 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
11 Hb_122636_010 0.1897097739 - - dienelactone hydrolase family protein [Populus trichocarpa]
12 Hb_010577_010 0.1903578465 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
13 Hb_030992_010 0.1912517076 - - acetylornithine aminotransferase, putative [Ricinus communis]
14 Hb_000016_060 0.1923372822 - - mads box protein, putative [Ricinus communis]
15 Hb_188313_010 0.1927794683 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
16 Hb_002760_050 0.1947319887 - - conserved hypothetical protein [Ricinus communis]
17 Hb_184541_010 0.1988291232 - - PREDICTED: selT-like protein [Jatropha curcas]
18 Hb_001449_030 0.2002535908 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Jatropha curcas]
19 Hb_148130_020 0.2022969583 - - -
20 Hb_002611_030 0.205576987 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_010984_040 Hb_010984_040 Hb_004525_050 Hb_004525_050 Hb_010984_040--Hb_004525_050 Hb_100137_010 Hb_100137_010 Hb_010984_040--Hb_100137_010 Hb_006634_110 Hb_006634_110 Hb_010984_040--Hb_006634_110 Hb_009083_030 Hb_009083_030 Hb_010984_040--Hb_009083_030 Hb_048702_010 Hb_048702_010 Hb_010984_040--Hb_048702_010 Hb_121694_010 Hb_121694_010 Hb_010984_040--Hb_121694_010 Hb_002760_050 Hb_002760_050 Hb_004525_050--Hb_002760_050 Hb_004525_050--Hb_048702_010 Hb_004525_050--Hb_100137_010 Hb_004525_050--Hb_006634_110 Hb_000950_030 Hb_000950_030 Hb_004525_050--Hb_000950_030 Hb_004466_060 Hb_004466_060 Hb_100137_010--Hb_004466_060 Hb_100137_010--Hb_048702_010 Hb_002611_030 Hb_002611_030 Hb_100137_010--Hb_002611_030 Hb_000077_290 Hb_000077_290 Hb_100137_010--Hb_000077_290 Hb_122636_010 Hb_122636_010 Hb_100137_010--Hb_122636_010 Hb_001217_010 Hb_001217_010 Hb_100137_010--Hb_001217_010 Hb_006634_110--Hb_122636_010 Hb_006634_110--Hb_048702_010 Hb_006634_110--Hb_100137_010 Hb_010577_010 Hb_010577_010 Hb_006634_110--Hb_010577_010 Hb_053709_040 Hb_053709_040 Hb_006634_110--Hb_053709_040 Hb_000671_130 Hb_000671_130 Hb_006634_110--Hb_000671_130 Hb_188313_010 Hb_188313_010 Hb_009083_030--Hb_188313_010 Hb_182713_020 Hb_182713_020 Hb_009083_030--Hb_182713_020 Hb_009083_030--Hb_100137_010 Hb_184541_010 Hb_184541_010 Hb_009083_030--Hb_184541_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_009083_030--Hb_002611_030 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_048702_010--Hb_122636_010 Hb_048702_010--Hb_010577_010 Hb_121694_010--Hb_009083_030 Hb_121694_010--Hb_184541_010 Hb_047691_010 Hb_047691_010 Hb_121694_010--Hb_047691_010 Hb_004125_070 Hb_004125_070 Hb_121694_010--Hb_004125_070 Hb_001059_140 Hb_001059_140 Hb_121694_010--Hb_001059_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.87917 2.89956 9.70556 76.5128 3.39406 23.3858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8228 10.2493 1.31074 15.89 14.6893

CAGE analysis