Hb_002820_130

Information

Type -
Description -
Location Contig2820: 97310-97884
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_130 0.0 - - -
2 Hb_097783_010 0.210881268 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
3 Hb_007545_200 0.2252169171 - - Pectinesterase-3 precursor, putative [Ricinus communis]
4 Hb_104169_010 0.2377707878 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
5 Hb_072290_010 0.2473919427 - - PREDICTED: GRF1-interacting factor 1 [Gossypium raimondii]
6 Hb_133648_010 0.2514048015 - - -
7 Hb_011381_090 0.2633332936 - - Protein ABC1, mitochondrial precursor, putative [Ricinus communis]
8 Hb_157968_010 0.269822599 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_155541_020 0.2836420692 - - -
10 Hb_010050_010 0.2849071282 - - -
11 Hb_116360_010 0.2869975468 - - -
12 Hb_000343_170 0.2876140604 - - PREDICTED: probable sulfate transporter 3.4 [Jatropha curcas]
13 Hb_080081_010 0.2908846646 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Fragaria vesca subsp. vesca]
14 Hb_003641_010 0.2920967241 - - Pectinesterase-3 precursor, putative [Ricinus communis]
15 Hb_000893_010 0.2970557306 - - PREDICTED: uncharacterized protein LOC105135422 [Populus euphratica]
16 Hb_003531_010 0.2996142683 - - scab resistance family protein [Populus trichocarpa]
17 Hb_001660_010 0.3025797885 - - conserved hypothetical protein [Ricinus communis]
18 Hb_052802_010 0.3029185256 - - kinase, putative [Ricinus communis]
19 Hb_002078_190 0.3038849838 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000320_250 0.3089809732 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]

Gene co-expression network

sample Hb_002820_130 Hb_002820_130 Hb_097783_010 Hb_097783_010 Hb_002820_130--Hb_097783_010 Hb_007545_200 Hb_007545_200 Hb_002820_130--Hb_007545_200 Hb_104169_010 Hb_104169_010 Hb_002820_130--Hb_104169_010 Hb_072290_010 Hb_072290_010 Hb_002820_130--Hb_072290_010 Hb_133648_010 Hb_133648_010 Hb_002820_130--Hb_133648_010 Hb_011381_090 Hb_011381_090 Hb_002820_130--Hb_011381_090 Hb_000343_170 Hb_000343_170 Hb_097783_010--Hb_000343_170 Hb_097783_010--Hb_133648_010 Hb_000085_120 Hb_000085_120 Hb_097783_010--Hb_000085_120 Hb_003641_010 Hb_003641_010 Hb_097783_010--Hb_003641_010 Hb_097783_010--Hb_007545_200 Hb_007545_200--Hb_000343_170 Hb_119600_020 Hb_119600_020 Hb_007545_200--Hb_119600_020 Hb_052802_010 Hb_052802_010 Hb_007545_200--Hb_052802_010 Hb_003906_030 Hb_003906_030 Hb_007545_200--Hb_003906_030 Hb_020805_160 Hb_020805_160 Hb_007545_200--Hb_020805_160 Hb_001810_050 Hb_001810_050 Hb_007545_200--Hb_001810_050 Hb_104169_010--Hb_072290_010 Hb_004705_090 Hb_004705_090 Hb_104169_010--Hb_004705_090 Hb_000365_040 Hb_000365_040 Hb_104169_010--Hb_000365_040 Hb_009411_030 Hb_009411_030 Hb_104169_010--Hb_009411_030 Hb_000860_030 Hb_000860_030 Hb_104169_010--Hb_000860_030 Hb_008536_030 Hb_008536_030 Hb_104169_010--Hb_008536_030 Hb_048183_010 Hb_048183_010 Hb_072290_010--Hb_048183_010 Hb_072290_010--Hb_004705_090 Hb_002984_020 Hb_002984_020 Hb_072290_010--Hb_002984_020 Hb_072290_010--Hb_133648_010 Hb_178711_010 Hb_178711_010 Hb_072290_010--Hb_178711_010 Hb_158296_010 Hb_158296_010 Hb_133648_010--Hb_158296_010 Hb_133648_010--Hb_048183_010 Hb_007416_080 Hb_007416_080 Hb_133648_010--Hb_007416_080 Hb_000562_010 Hb_000562_010 Hb_133648_010--Hb_000562_010 Hb_000164_210 Hb_000164_210 Hb_011381_090--Hb_000164_210 Hb_063907_010 Hb_063907_010 Hb_011381_090--Hb_063907_010 Hb_001195_240 Hb_001195_240 Hb_011381_090--Hb_001195_240 Hb_011381_090--Hb_008536_030 Hb_000237_010 Hb_000237_010 Hb_011381_090--Hb_000237_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0856706 0.150523 0 0.706302 0 0.156244
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0685189 0

CAGE analysis