Hb_001195_240

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig1195: 123550-126373
Sequence    

Annotation

kegg
ID rcu:RCOM_1594410
description DNA binding protein, putative
nr
ID XP_012071856.1
description PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
swissprot
ID Q1A173
description Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1
trembl
ID A0A067KU42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04433 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein radialis-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05800: 123270-124330
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_240 0.0 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
2 Hb_000164_210 0.2246263188 - - glutaredoxin-1, grx1, putative [Ricinus communis]
3 Hb_004330_060 0.2469734919 - - hypothetical protein POPTR_0011s01530g [Populus trichocarpa]
4 Hb_005656_020 0.2508874544 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
5 Hb_001424_050 0.2509128675 - - PREDICTED: zinc finger protein HD1-like isoform X2 [Jatropha curcas]
6 Hb_175976_020 0.2510978239 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
7 Hb_034507_020 0.2511098869 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_017226_020 0.2511612898 transcription factor TF Family: MYB hypothetical protein JCGZ_06720 [Jatropha curcas]
9 Hb_142461_010 0.2515377229 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_000819_050 0.2528342538 - - hypothetical protein Csa_4G290160 [Cucumis sativus]
11 Hb_023280_020 0.2532157561 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
12 Hb_000345_520 0.2533982767 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]
13 Hb_000996_090 0.2542191067 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
14 Hb_000483_290 0.2553796549 - - PREDICTED: ankyrin-1-like [Prunus mume]
15 Hb_010681_020 0.2554217472 - - JHL22C18.10 [Jatropha curcas]
16 Hb_007101_240 0.2556079312 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011381_090 0.2557867676 - - Protein ABC1, mitochondrial precursor, putative [Ricinus communis]
18 Hb_000421_150 0.2558292139 - - Zinc finger protein GIS2 [Medicago truncatula]
19 Hb_099777_010 0.2561516911 - - PREDICTED: uncharacterized protein LOC104884611 [Beta vulgaris subsp. vulgaris]
20 Hb_004634_010 0.2574627569 - - hypothetical protein POPTR_0002s23100g [Populus trichocarpa]

Gene co-expression network

sample Hb_001195_240 Hb_001195_240 Hb_000164_210 Hb_000164_210 Hb_001195_240--Hb_000164_210 Hb_004330_060 Hb_004330_060 Hb_001195_240--Hb_004330_060 Hb_005656_020 Hb_005656_020 Hb_001195_240--Hb_005656_020 Hb_001424_050 Hb_001424_050 Hb_001195_240--Hb_001424_050 Hb_175976_020 Hb_175976_020 Hb_001195_240--Hb_175976_020 Hb_034507_020 Hb_034507_020 Hb_001195_240--Hb_034507_020 Hb_003988_020 Hb_003988_020 Hb_000164_210--Hb_003988_020 Hb_000579_160 Hb_000579_160 Hb_000164_210--Hb_000579_160 Hb_109187_010 Hb_109187_010 Hb_000164_210--Hb_109187_010 Hb_041188_010 Hb_041188_010 Hb_000164_210--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_000164_210--Hb_025526_110 Hb_000589_080 Hb_000589_080 Hb_000164_210--Hb_000589_080 Hb_059226_020 Hb_059226_020 Hb_004330_060--Hb_059226_020 Hb_039946_040 Hb_039946_040 Hb_004330_060--Hb_039946_040 Hb_159012_010 Hb_159012_010 Hb_004330_060--Hb_159012_010 Hb_002003_100 Hb_002003_100 Hb_004330_060--Hb_002003_100 Hb_000480_050 Hb_000480_050 Hb_004330_060--Hb_000480_050 Hb_082733_010 Hb_082733_010 Hb_004330_060--Hb_082733_010 Hb_005656_020--Hb_001424_050 Hb_005656_020--Hb_175976_020 Hb_142461_010 Hb_142461_010 Hb_005656_020--Hb_142461_010 Hb_005656_020--Hb_034507_020 Hb_017226_020 Hb_017226_020 Hb_005656_020--Hb_017226_020 Hb_000819_050 Hb_000819_050 Hb_005656_020--Hb_000819_050 Hb_001424_050--Hb_175976_020 Hb_001424_050--Hb_142461_010 Hb_001424_050--Hb_034507_020 Hb_001424_050--Hb_017226_020 Hb_001424_050--Hb_000819_050 Hb_175976_020--Hb_142461_010 Hb_175976_020--Hb_000819_050 Hb_175976_020--Hb_034507_020 Hb_175976_020--Hb_017226_020 Hb_034507_020--Hb_017226_020 Hb_034507_020--Hb_142461_010 Hb_000996_090 Hb_000996_090 Hb_034507_020--Hb_000996_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149312 0 0 0.824181 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.267637 0

CAGE analysis