Hb_158296_010

Information

Type -
Description -
Location Contig158296: 120-705
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_012074441.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0005506
description choline chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158296_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_000562_010 0.1444784225 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
3 Hb_133648_010 0.161306025 - - -
4 Hb_007416_080 0.1869368395 - - -
5 Hb_001208_020 0.187614747 - - -
6 Hb_000164_130 0.2080214159 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_000244_140 0.2117022909 - - PREDICTED: cell wall / vacuolar inhibitor of fructosidase 2 [Jatropha curcas]
8 Hb_048183_010 0.2152323892 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_074836_020 0.2194294759 - - unnamed protein product [Vitis vinifera]
10 Hb_053345_010 0.2231642651 - - -
11 Hb_000577_070 0.2244919065 - - -
12 Hb_000172_470 0.224703635 - - hypothetical protein POPTR_0005s08310g [Populus trichocarpa]
13 Hb_010367_020 0.2292599207 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
14 Hb_122741_010 0.2323537532 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
15 Hb_007575_090 0.2355168328 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
16 Hb_009803_010 0.2365913309 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
17 Hb_000092_050 0.2388596331 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
18 Hb_001916_010 0.2393516714 - - hypothetical protein VITISV_021527 [Vitis vinifera]
19 Hb_004525_080 0.2422125861 - - Sugar transporter ERD6-like 6 [Morus notabilis]
20 Hb_097783_010 0.2461771235 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_158296_010 Hb_158296_010 Hb_000562_010 Hb_000562_010 Hb_158296_010--Hb_000562_010 Hb_133648_010 Hb_133648_010 Hb_158296_010--Hb_133648_010 Hb_007416_080 Hb_007416_080 Hb_158296_010--Hb_007416_080 Hb_001208_020 Hb_001208_020 Hb_158296_010--Hb_001208_020 Hb_000164_130 Hb_000164_130 Hb_158296_010--Hb_000164_130 Hb_000244_140 Hb_000244_140 Hb_158296_010--Hb_000244_140 Hb_000562_010--Hb_001208_020 Hb_000562_010--Hb_007416_080 Hb_001248_180 Hb_001248_180 Hb_000562_010--Hb_001248_180 Hb_000562_010--Hb_133648_010 Hb_000562_010--Hb_000164_130 Hb_048183_010 Hb_048183_010 Hb_133648_010--Hb_048183_010 Hb_097783_010 Hb_097783_010 Hb_133648_010--Hb_097783_010 Hb_133648_010--Hb_007416_080 Hb_072290_010 Hb_072290_010 Hb_133648_010--Hb_072290_010 Hb_007416_080--Hb_048183_010 Hb_007416_080--Hb_000164_130 Hb_007416_080--Hb_001208_020 Hb_053073_010 Hb_053073_010 Hb_001208_020--Hb_053073_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_003894_090 Hb_003894_090 Hb_001208_020--Hb_003894_090 Hb_000164_130--Hb_048183_010 Hb_000164_130--Hb_133648_010 Hb_000164_130--Hb_001208_020 Hb_000092_050 Hb_000092_050 Hb_000244_140--Hb_000092_050 Hb_080081_010 Hb_080081_010 Hb_000244_140--Hb_080081_010 Hb_000577_070 Hb_000577_070 Hb_000244_140--Hb_000577_070 Hb_000172_470 Hb_000172_470 Hb_000244_140--Hb_000172_470 Hb_074836_020 Hb_074836_020 Hb_000244_140--Hb_074836_020 Hb_005479_050 Hb_005479_050 Hb_000244_140--Hb_005479_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.89155 18.7851 35.7348 234.36 1.62814 59.2474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.47431 2.33015 0 0.907022 0.561922

CAGE analysis