Hb_001208_020

Information

Type -
Description -
Location Contig1208: 20899-28648
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0009507
description cbs domain-containing protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06421: 28564-45980
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001208_020 0.0 - - -
2 Hb_053073_010 0.1481942309 - - -
3 Hb_000562_010 0.1713634201 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
4 Hb_158296_010 0.187614747 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_005951_010 0.2111509202 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000134_100 0.2149271707 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
7 Hb_003894_090 0.2206091813 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002965_180 0.2230007781 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
9 Hb_081228_010 0.2231068833 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
10 Hb_002108_020 0.2249076407 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
11 Hb_007416_080 0.227915927 - - -
12 Hb_012675_020 0.2296012771 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
13 Hb_000164_130 0.2337463289 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
14 Hb_149194_010 0.2370775022 - - hypothetical protein JCGZ_17021 [Jatropha curcas]
15 Hb_053345_010 0.2371358383 - - -
16 Hb_001916_010 0.2425216265 - - hypothetical protein VITISV_021527 [Vitis vinifera]
17 Hb_001248_180 0.243026897 - - -
18 Hb_009372_050 0.2502256799 - - unnamed protein product [Vitis vinifera]
19 Hb_002636_140 0.2519167043 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
20 Hb_014705_010 0.2536445629 - - hypothetical protein JCGZ_21106 [Jatropha curcas]

Gene co-expression network

sample Hb_001208_020 Hb_001208_020 Hb_053073_010 Hb_053073_010 Hb_001208_020--Hb_053073_010 Hb_000562_010 Hb_000562_010 Hb_001208_020--Hb_000562_010 Hb_158296_010 Hb_158296_010 Hb_001208_020--Hb_158296_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_003894_090 Hb_003894_090 Hb_001208_020--Hb_003894_090 Hb_002965_180 Hb_002965_180 Hb_053073_010--Hb_002965_180 Hb_001459_040 Hb_001459_040 Hb_053073_010--Hb_001459_040 Hb_163400_010 Hb_163400_010 Hb_053073_010--Hb_163400_010 Hb_149194_010 Hb_149194_010 Hb_053073_010--Hb_149194_010 Hb_014705_010 Hb_014705_010 Hb_053073_010--Hb_014705_010 Hb_000562_010--Hb_158296_010 Hb_007416_080 Hb_007416_080 Hb_000562_010--Hb_007416_080 Hb_001248_180 Hb_001248_180 Hb_000562_010--Hb_001248_180 Hb_133648_010 Hb_133648_010 Hb_000562_010--Hb_133648_010 Hb_000164_130 Hb_000164_130 Hb_000562_010--Hb_000164_130 Hb_158296_010--Hb_133648_010 Hb_158296_010--Hb_007416_080 Hb_158296_010--Hb_000164_130 Hb_000244_140 Hb_000244_140 Hb_158296_010--Hb_000244_140 Hb_157881_010 Hb_157881_010 Hb_005951_010--Hb_157881_010 Hb_002534_140 Hb_002534_140 Hb_005951_010--Hb_002534_140 Hb_004342_040 Hb_004342_040 Hb_005951_010--Hb_004342_040 Hb_001976_070 Hb_001976_070 Hb_005951_010--Hb_001976_070 Hb_061335_010 Hb_061335_010 Hb_005951_010--Hb_061335_010 Hb_005057_020 Hb_005057_020 Hb_005951_010--Hb_005057_020 Hb_002108_020 Hb_002108_020 Hb_000134_100--Hb_002108_020 Hb_012675_020 Hb_012675_020 Hb_000134_100--Hb_012675_020 Hb_001916_010 Hb_001916_010 Hb_000134_100--Hb_001916_010 Hb_004907_040 Hb_004907_040 Hb_000134_100--Hb_004907_040 Hb_002636_140 Hb_002636_140 Hb_000134_100--Hb_002636_140 Hb_122741_010 Hb_122741_010 Hb_000134_100--Hb_122741_010 Hb_115823_010 Hb_115823_010 Hb_003894_090--Hb_115823_010 Hb_007904_050 Hb_007904_050 Hb_003894_090--Hb_007904_050 Hb_002217_370 Hb_002217_370 Hb_003894_090--Hb_002217_370 Hb_022425_020 Hb_022425_020 Hb_003894_090--Hb_022425_020 Hb_003894_090--Hb_053073_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0923534 0.424164 1.32636 3.29453 0 0.674379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis