Hb_002534_140

Information

Type -
Description -
Location Contig2534: 89497-89781
Sequence    

Annotation

kegg
ID rcu:RCOM_1472270
description hypothetical protein
nr
ID KDP31253.1
description hypothetical protein JCGZ_11629 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11629 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26498: 89110-90097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_140 0.0 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
2 Hb_061335_010 0.0884752279 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
3 Hb_008895_010 0.1092857879 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004324_180 0.1093244898 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_176760_010 0.1094112381 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
6 Hb_039046_010 0.1096291792 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
7 Hb_009615_140 0.1097759952 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
8 Hb_126871_010 0.1098067364 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
9 Hb_000172_040 0.1098498238 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
10 Hb_007058_020 0.1100264569 - - -
11 Hb_006111_050 0.1100835807 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
12 Hb_001926_060 0.1101455896 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
13 Hb_163180_010 0.1102900166 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
14 Hb_004881_090 0.1106832692 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
15 Hb_001248_160 0.1108897307 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
16 Hb_000834_120 0.1111044164 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
17 Hb_000373_090 0.1113626198 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
18 Hb_003486_040 0.1114285144 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
19 Hb_001136_150 0.1115622652 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000049_320 0.1116168318 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]

Gene co-expression network

sample Hb_002534_140 Hb_002534_140 Hb_061335_010 Hb_061335_010 Hb_002534_140--Hb_061335_010 Hb_008895_010 Hb_008895_010 Hb_002534_140--Hb_008895_010 Hb_004324_180 Hb_004324_180 Hb_002534_140--Hb_004324_180 Hb_176760_010 Hb_176760_010 Hb_002534_140--Hb_176760_010 Hb_039046_010 Hb_039046_010 Hb_002534_140--Hb_039046_010 Hb_009615_140 Hb_009615_140 Hb_002534_140--Hb_009615_140 Hb_122079_010 Hb_122079_010 Hb_061335_010--Hb_122079_010 Hb_004342_040 Hb_004342_040 Hb_061335_010--Hb_004342_040 Hb_005057_020 Hb_005057_020 Hb_061335_010--Hb_005057_020 Hb_157881_010 Hb_157881_010 Hb_061335_010--Hb_157881_010 Hb_000053_150 Hb_000053_150 Hb_061335_010--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_061335_010--Hb_010812_080 Hb_008895_010--Hb_004324_180 Hb_008895_010--Hb_039046_010 Hb_008895_010--Hb_009615_140 Hb_008895_010--Hb_176760_010 Hb_126871_010 Hb_126871_010 Hb_008895_010--Hb_126871_010 Hb_000172_040 Hb_000172_040 Hb_008895_010--Hb_000172_040 Hb_004324_180--Hb_039046_010 Hb_004324_180--Hb_009615_140 Hb_004324_180--Hb_126871_010 Hb_004324_180--Hb_000172_040 Hb_006111_050 Hb_006111_050 Hb_004324_180--Hb_006111_050 Hb_007058_020 Hb_007058_020 Hb_176760_010--Hb_007058_020 Hb_001926_060 Hb_001926_060 Hb_176760_010--Hb_001926_060 Hb_163180_010 Hb_163180_010 Hb_176760_010--Hb_163180_010 Hb_176760_010--Hb_004324_180 Hb_001248_160 Hb_001248_160 Hb_176760_010--Hb_001248_160 Hb_039046_010--Hb_009615_140 Hb_039046_010--Hb_126871_010 Hb_039046_010--Hb_000172_040 Hb_039046_010--Hb_006111_050 Hb_009615_140--Hb_126871_010 Hb_009615_140--Hb_000172_040 Hb_009615_140--Hb_006111_050 Hb_004881_090 Hb_004881_090 Hb_009615_140--Hb_004881_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.17333 3.22834 11.1202 0 0.17453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis