Hb_004907_040

Information

Type -
Description -
Location Contig4907: 89909-91162
Sequence    

Annotation

kegg
ID pop:POPTR_0011s079751
description hypothetical protein
nr
ID XP_006377589.1
description hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID U5FZI4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0011s079751g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004907_040 0.0 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
2 Hb_001916_010 0.0688956312 - - hypothetical protein VITISV_021527 [Vitis vinifera]
3 Hb_122741_010 0.1231081629 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
4 Hb_000134_100 0.1337360092 - - PREDICTED: putative disease resistance protein RGA1 [Prunus mume]
5 Hb_002108_020 0.1732558823 - - hypothetical protein JCGZ_16012 [Jatropha curcas]
6 Hb_012539_090 0.22570006 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
7 Hb_012675_020 0.2305719081 - - hypothetical protein CISIN_1g018227mg [Citrus sinensis]
8 Hb_007904_050 0.2341302064 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
9 Hb_115823_010 0.2497597856 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002636_140 0.2510907672 - - PREDICTED: GDSL esterase/lipase At1g71691-like [Populus euphratica]
11 Hb_009803_010 0.2554723823 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
12 Hb_060585_010 0.2555840779 - - unnamed protein product [Coffea canephora]
13 Hb_001208_020 0.2594580084 - - -
14 Hb_022425_020 0.269016599 - - -
15 Hb_010367_020 0.2750135309 - - hypothetical protein POPTR_0009s054801g, partial [Populus trichocarpa]
16 Hb_158296_010 0.2786602523 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_000331_050 0.2824420016 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
18 Hb_007416_080 0.2863954151 - - -
19 Hb_017895_010 0.2960568776 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
20 Hb_003894_090 0.2974816403 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004907_040 Hb_004907_040 Hb_001916_010 Hb_001916_010 Hb_004907_040--Hb_001916_010 Hb_122741_010 Hb_122741_010 Hb_004907_040--Hb_122741_010 Hb_000134_100 Hb_000134_100 Hb_004907_040--Hb_000134_100 Hb_002108_020 Hb_002108_020 Hb_004907_040--Hb_002108_020 Hb_012539_090 Hb_012539_090 Hb_004907_040--Hb_012539_090 Hb_012675_020 Hb_012675_020 Hb_004907_040--Hb_012675_020 Hb_001916_010--Hb_122741_010 Hb_001916_010--Hb_000134_100 Hb_001916_010--Hb_002108_020 Hb_001916_010--Hb_012675_020 Hb_009803_010 Hb_009803_010 Hb_001916_010--Hb_009803_010 Hb_122741_010--Hb_009803_010 Hb_122741_010--Hb_000134_100 Hb_010367_020 Hb_010367_020 Hb_122741_010--Hb_010367_020 Hb_158296_010 Hb_158296_010 Hb_122741_010--Hb_158296_010 Hb_000134_100--Hb_002108_020 Hb_000134_100--Hb_012675_020 Hb_002636_140 Hb_002636_140 Hb_000134_100--Hb_002636_140 Hb_002108_020--Hb_002636_140 Hb_002108_020--Hb_012675_020 Hb_022425_020 Hb_022425_020 Hb_002108_020--Hb_022425_020 Hb_001832_220 Hb_001832_220 Hb_012539_090--Hb_001832_220 Hb_003551_040 Hb_003551_040 Hb_012539_090--Hb_003551_040 Hb_154381_010 Hb_154381_010 Hb_012539_090--Hb_154381_010 Hb_012539_090--Hb_002108_020 Hb_012539_090--Hb_000134_100 Hb_012675_020--Hb_002636_140 Hb_002534_140 Hb_002534_140 Hb_012675_020--Hb_002534_140 Hb_012675_020--Hb_022425_020 Hb_001689_060 Hb_001689_060 Hb_012675_020--Hb_001689_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0146512 0.0309108 0 0.0163252
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis