Hb_001832_220

Information

Type -
Description -
Location Contig1832: 230108-230503
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0007165
description pci domain-containing protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001832_220 0.0 - - -
2 Hb_012539_090 0.1378318006 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
3 Hb_003551_040 0.1381825822 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
4 Hb_154381_010 0.1451782803 - - -
5 Hb_002311_460 0.1774259514 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000737_020 0.1803937125 - - -
7 Hb_011609_200 0.2487852582 - - PREDICTED: ultraviolet-B receptor UVR8-like isoform X3 [Populus euphratica]
8 Hb_030885_020 0.2529366048 - - -
9 Hb_000732_200 0.254368219 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000617_160 0.2551168978 - - -
11 Hb_138585_070 0.2553839563 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000504_060 0.2558092493 - - Cell division cycle protein cdt2, putative [Ricinus communis]
13 Hb_005551_070 0.2558824464 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]
14 Hb_002759_200 0.2564003432 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
15 Hb_000078_160 0.2572625323 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
16 Hb_000984_280 0.2574056636 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
17 Hb_005305_170 0.2577105592 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
18 Hb_005357_040 0.2599194209 - - gibberellin 20-oxidase, putative [Ricinus communis]
19 Hb_060585_010 0.2601432572 - - unnamed protein product [Coffea canephora]
20 Hb_000046_550 0.2609981053 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001832_220 Hb_001832_220 Hb_012539_090 Hb_012539_090 Hb_001832_220--Hb_012539_090 Hb_003551_040 Hb_003551_040 Hb_001832_220--Hb_003551_040 Hb_154381_010 Hb_154381_010 Hb_001832_220--Hb_154381_010 Hb_002311_460 Hb_002311_460 Hb_001832_220--Hb_002311_460 Hb_000737_020 Hb_000737_020 Hb_001832_220--Hb_000737_020 Hb_011609_200 Hb_011609_200 Hb_001832_220--Hb_011609_200 Hb_012539_090--Hb_003551_040 Hb_012539_090--Hb_154381_010 Hb_002108_020 Hb_002108_020 Hb_012539_090--Hb_002108_020 Hb_004907_040 Hb_004907_040 Hb_012539_090--Hb_004907_040 Hb_000134_100 Hb_000134_100 Hb_012539_090--Hb_000134_100 Hb_003551_040--Hb_154381_010 Hb_003551_040--Hb_002311_460 Hb_030885_020 Hb_030885_020 Hb_003551_040--Hb_030885_020 Hb_003551_040--Hb_000737_020 Hb_154381_010--Hb_002311_460 Hb_154381_010--Hb_030885_020 Hb_154381_010--Hb_000737_020 Hb_002311_460--Hb_000737_020 Hb_000078_160 Hb_000078_160 Hb_002311_460--Hb_000078_160 Hb_004885_020 Hb_004885_020 Hb_002311_460--Hb_004885_020 Hb_000743_070 Hb_000743_070 Hb_000737_020--Hb_000743_070 Hb_000127_050 Hb_000127_050 Hb_000737_020--Hb_000127_050 Hb_160814_010 Hb_160814_010 Hb_000737_020--Hb_160814_010 Hb_004785_150 Hb_004785_150 Hb_000737_020--Hb_004785_150 Hb_160479_010 Hb_160479_010 Hb_011609_200--Hb_160479_010 Hb_033691_010 Hb_033691_010 Hb_011609_200--Hb_033691_010 Hb_010068_010 Hb_010068_010 Hb_011609_200--Hb_010068_010 Hb_000156_150 Hb_000156_150 Hb_011609_200--Hb_000156_150 Hb_000926_240 Hb_000926_240 Hb_011609_200--Hb_000926_240 Hb_104362_010 Hb_104362_010 Hb_011609_200--Hb_104362_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.36095 2.81442 0 0.680998
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.838681 0

CAGE analysis