Hb_000078_160

Information

Type -
Description -
Location Contig78: 320893-322097
Sequence    

Annotation

kegg
ID rcu:RCOM_1074980
description hypothetical protein
nr
ID XP_012081223.1
description PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
swissprot
ID Q9LVZ8
description Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1
trembl
ID A0A067K5I8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57910: 321390-321724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000078_160 0.0 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
2 Hb_001478_070 0.154518276 - - PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
3 Hb_000465_130 0.1690697983 transcription factor TF Family: ERF hypothetical protein POPTR_0001s15550g [Populus trichocarpa]
4 Hb_004846_080 0.1904035538 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
5 Hb_030694_010 0.1979523788 - - PREDICTED: endoglucanase 25-like [Solanum tuberosum]
6 Hb_002311_460 0.199411733 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_008143_060 0.2248520173 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
8 Hb_001832_140 0.227609476 - - endomembrane protein 70 family protein [Medicago truncatula]
9 Hb_000749_120 0.2290301876 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
10 Hb_000737_020 0.2324599561 - - -
11 Hb_003050_100 0.2428536663 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
12 Hb_001252_070 0.2431785858 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
13 Hb_003189_010 0.2440573828 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
14 Hb_005144_080 0.2463814192 - - Serine carboxypeptidase, putative [Ricinus communis]
15 Hb_005839_030 0.2476864494 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
16 Hb_006277_030 0.2480883451 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004984_020 0.249034045 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
18 Hb_003551_040 0.2504633167 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
19 Hb_002818_170 0.2510308668 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
20 Hb_027556_060 0.2512817749 - - hypothetical protein POPTR_0001s03520g [Populus trichocarpa]

Gene co-expression network

sample Hb_000078_160 Hb_000078_160 Hb_001478_070 Hb_001478_070 Hb_000078_160--Hb_001478_070 Hb_000465_130 Hb_000465_130 Hb_000078_160--Hb_000465_130 Hb_004846_080 Hb_004846_080 Hb_000078_160--Hb_004846_080 Hb_030694_010 Hb_030694_010 Hb_000078_160--Hb_030694_010 Hb_002311_460 Hb_002311_460 Hb_000078_160--Hb_002311_460 Hb_008143_060 Hb_008143_060 Hb_000078_160--Hb_008143_060 Hb_001478_070--Hb_030694_010 Hb_001652_030 Hb_001652_030 Hb_001478_070--Hb_001652_030 Hb_001421_030 Hb_001421_030 Hb_001478_070--Hb_001421_030 Hb_001478_070--Hb_000465_130 Hb_000635_110 Hb_000635_110 Hb_001478_070--Hb_000635_110 Hb_000465_130--Hb_004846_080 Hb_001832_140 Hb_001832_140 Hb_000465_130--Hb_001832_140 Hb_000465_130--Hb_008143_060 Hb_001195_740 Hb_001195_740 Hb_000465_130--Hb_001195_740 Hb_001776_070 Hb_001776_070 Hb_000465_130--Hb_001776_070 Hb_001252_050 Hb_001252_050 Hb_000465_130--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_004846_080--Hb_006711_040 Hb_004846_080--Hb_008143_060 Hb_004846_080--Hb_001832_140 Hb_005839_030 Hb_005839_030 Hb_004846_080--Hb_005839_030 Hb_001782_100 Hb_001782_100 Hb_004846_080--Hb_001782_100 Hb_000803_120 Hb_000803_120 Hb_030694_010--Hb_000803_120 Hb_002093_050 Hb_002093_050 Hb_030694_010--Hb_002093_050 Hb_153257_010 Hb_153257_010 Hb_030694_010--Hb_153257_010 Hb_003050_100 Hb_003050_100 Hb_030694_010--Hb_003050_100 Hb_003551_040 Hb_003551_040 Hb_002311_460--Hb_003551_040 Hb_000737_020 Hb_000737_020 Hb_002311_460--Hb_000737_020 Hb_154381_010 Hb_154381_010 Hb_002311_460--Hb_154381_010 Hb_001832_220 Hb_001832_220 Hb_002311_460--Hb_001832_220 Hb_004885_020 Hb_004885_020 Hb_002311_460--Hb_004885_020 Hb_008143_060--Hb_001195_740 Hb_008143_060--Hb_006711_040 Hb_008143_060--Hb_001832_140 Hb_008143_060--Hb_001252_050 Hb_000696_250 Hb_000696_250 Hb_008143_060--Hb_000696_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0845452 0.708014 0.987087 0 0.331574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.864482 0.146769

CAGE analysis