Hb_001478_070

Information

Type -
Description -
Location Contig1478: 96420-98298
Sequence    

Annotation

kegg
ID bdi:104583139
description uncharacterized LOC104583139
nr
ID XP_012472377.1
description PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NN01
description Uncharacterized protein OS=Gossypium arboreum GN=F383_17010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001478_070 0.0 - - PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
2 Hb_030694_010 0.137452403 - - PREDICTED: endoglucanase 25-like [Solanum tuberosum]
3 Hb_000078_160 0.154518276 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
4 Hb_001652_030 0.2205043924 - - hypothetical protein CISIN_1g019718mg [Citrus sinensis]
5 Hb_001421_030 0.2268124613 - - -
6 Hb_000465_130 0.2277346468 transcription factor TF Family: ERF hypothetical protein POPTR_0001s15550g [Populus trichocarpa]
7 Hb_000635_110 0.2337501226 - - ELMO domain-containing protein, putative [Ricinus communis]
8 Hb_005618_130 0.234997783 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_004846_080 0.2379860893 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
10 Hb_003050_100 0.2398803083 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
11 Hb_001832_140 0.2469143805 - - endomembrane protein 70 family protein [Medicago truncatula]
12 Hb_001252_070 0.2494733074 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
13 Hb_002681_120 0.2506594962 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
14 Hb_009620_070 0.2508540314 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
15 Hb_001474_010 0.2533540813 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
16 Hb_005485_070 0.2537111184 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
17 Hb_000803_120 0.2553486408 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
18 Hb_000749_120 0.2568393969 - - PREDICTED: uncharacterized protein LOC105644255 isoform X2 [Jatropha curcas]
19 Hb_005181_060 0.2596797839 - - ATP-citrate synthase, putative [Ricinus communis]
20 Hb_008695_150 0.2605190766 - - PREDICTED: beta-1,3-galactosyltransferase 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001478_070 Hb_001478_070 Hb_030694_010 Hb_030694_010 Hb_001478_070--Hb_030694_010 Hb_000078_160 Hb_000078_160 Hb_001478_070--Hb_000078_160 Hb_001652_030 Hb_001652_030 Hb_001478_070--Hb_001652_030 Hb_001421_030 Hb_001421_030 Hb_001478_070--Hb_001421_030 Hb_000465_130 Hb_000465_130 Hb_001478_070--Hb_000465_130 Hb_000635_110 Hb_000635_110 Hb_001478_070--Hb_000635_110 Hb_000803_120 Hb_000803_120 Hb_030694_010--Hb_000803_120 Hb_002093_050 Hb_002093_050 Hb_030694_010--Hb_002093_050 Hb_153257_010 Hb_153257_010 Hb_030694_010--Hb_153257_010 Hb_030694_010--Hb_000078_160 Hb_003050_100 Hb_003050_100 Hb_030694_010--Hb_003050_100 Hb_000078_160--Hb_000465_130 Hb_004846_080 Hb_004846_080 Hb_000078_160--Hb_004846_080 Hb_002311_460 Hb_002311_460 Hb_000078_160--Hb_002311_460 Hb_008143_060 Hb_008143_060 Hb_000078_160--Hb_008143_060 Hb_000127_080 Hb_000127_080 Hb_001652_030--Hb_000127_080 Hb_005181_060 Hb_005181_060 Hb_001652_030--Hb_005181_060 Hb_001916_030 Hb_001916_030 Hb_001652_030--Hb_001916_030 Hb_000186_290 Hb_000186_290 Hb_001652_030--Hb_000186_290 Hb_001652_030--Hb_003050_100 Hb_022149_020 Hb_022149_020 Hb_001421_030--Hb_022149_020 Hb_004807_050 Hb_004807_050 Hb_001421_030--Hb_004807_050 Hb_001087_010 Hb_001087_010 Hb_001421_030--Hb_001087_010 Hb_009838_020 Hb_009838_020 Hb_001421_030--Hb_009838_020 Hb_002110_090 Hb_002110_090 Hb_001421_030--Hb_002110_090 Hb_001146_050 Hb_001146_050 Hb_001421_030--Hb_001146_050 Hb_000465_130--Hb_004846_080 Hb_001832_140 Hb_001832_140 Hb_000465_130--Hb_001832_140 Hb_000465_130--Hb_008143_060 Hb_001195_740 Hb_001195_740 Hb_000465_130--Hb_001195_740 Hb_001776_070 Hb_001776_070 Hb_000465_130--Hb_001776_070 Hb_001252_050 Hb_001252_050 Hb_000465_130--Hb_001252_050 Hb_005168_020 Hb_005168_020 Hb_000635_110--Hb_005168_020 Hb_000668_050 Hb_000668_050 Hb_000635_110--Hb_000668_050 Hb_017358_050 Hb_017358_050 Hb_000635_110--Hb_017358_050 Hb_006916_130 Hb_006916_130 Hb_000635_110--Hb_006916_130 Hb_116190_010 Hb_116190_010 Hb_000635_110--Hb_116190_010 Hb_026419_010 Hb_026419_010 Hb_000635_110--Hb_026419_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0122434 0.102698 0.139669 0.0138398 0.057912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.148227 0.0552814

CAGE analysis