Hb_001652_030

Information

Type -
Description -
Location Contig1652: 52092-54950
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17620g
description POPTRDRAFT_713225; hypothetical protein
nr
ID KDO50034.1
description hypothetical protein CISIN_1g019718mg [Citrus sinensis]
swissprot
ID Q8GWX2
description Probable magnesium transporter NIPA6 OS=Arabidopsis thaliana GN=At2g21120 PE=2 SV=1
trembl
ID A0A067E484
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019718mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15220: 51713-52613 , PASA_asmbl_15221: 53397-64547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001652_030 0.0 - - hypothetical protein CISIN_1g019718mg [Citrus sinensis]
2 Hb_000127_080 0.2115978045 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
3 Hb_005181_060 0.2126495341 - - ATP-citrate synthase, putative [Ricinus communis]
4 Hb_001916_030 0.2184435679 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
5 Hb_001478_070 0.2205043924 - - PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
6 Hb_000186_290 0.220684037 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
7 Hb_003050_100 0.2210060853 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
8 Hb_078081_010 0.2290189962 - - hypothetical protein PRUPE_ppa015726mg [Prunus persica]
9 Hb_003092_050 0.2328681866 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
10 Hb_015978_010 0.23322783 - - PREDICTED: probable beta-D-xylosidase 2 [Populus euphratica]
11 Hb_006501_100 0.235910688 - - malic enzyme, putative [Ricinus communis]
12 Hb_004785_090 0.2406668389 - - hypothetical protein MIMGU_mgv1a018797mg [Erythranthe guttata]
13 Hb_001472_110 0.2408762178 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
14 Hb_004346_010 0.2443916516 - - conserved hypothetical protein [Ricinus communis]
15 Hb_029510_090 0.2459114691 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
16 Hb_002681_120 0.2463208689 - - PREDICTED: GDSL esterase/lipase At5g14450 [Jatropha curcas]
17 Hb_011849_020 0.2475379881 - - dioxygenase family protein [Populus trichocarpa]
18 Hb_102710_010 0.247793335 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
19 Hb_002527_060 0.2506121198 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
20 Hb_000590_070 0.2527544087 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001652_030 Hb_001652_030 Hb_000127_080 Hb_000127_080 Hb_001652_030--Hb_000127_080 Hb_005181_060 Hb_005181_060 Hb_001652_030--Hb_005181_060 Hb_001916_030 Hb_001916_030 Hb_001652_030--Hb_001916_030 Hb_001478_070 Hb_001478_070 Hb_001652_030--Hb_001478_070 Hb_000186_290 Hb_000186_290 Hb_001652_030--Hb_000186_290 Hb_003050_100 Hb_003050_100 Hb_001652_030--Hb_003050_100 Hb_004282_010 Hb_004282_010 Hb_000127_080--Hb_004282_010 Hb_006501_100 Hb_006501_100 Hb_000127_080--Hb_006501_100 Hb_000956_070 Hb_000956_070 Hb_000127_080--Hb_000956_070 Hb_164117_010 Hb_164117_010 Hb_000127_080--Hb_164117_010 Hb_085315_010 Hb_085315_010 Hb_000127_080--Hb_085315_010 Hb_007632_130 Hb_007632_130 Hb_000127_080--Hb_007632_130 Hb_000590_070 Hb_000590_070 Hb_005181_060--Hb_000590_070 Hb_002527_060 Hb_002527_060 Hb_005181_060--Hb_002527_060 Hb_002026_070 Hb_002026_070 Hb_005181_060--Hb_002026_070 Hb_001894_010 Hb_001894_010 Hb_005181_060--Hb_001894_010 Hb_005485_070 Hb_005485_070 Hb_005181_060--Hb_005485_070 Hb_000473_030 Hb_000473_030 Hb_005181_060--Hb_000473_030 Hb_004346_010 Hb_004346_010 Hb_001916_030--Hb_004346_010 Hb_001675_040 Hb_001675_040 Hb_001916_030--Hb_001675_040 Hb_007134_030 Hb_007134_030 Hb_001916_030--Hb_007134_030 Hb_000645_250 Hb_000645_250 Hb_001916_030--Hb_000645_250 Hb_060152_010 Hb_060152_010 Hb_001916_030--Hb_060152_010 Hb_000373_060 Hb_000373_060 Hb_001916_030--Hb_000373_060 Hb_030694_010 Hb_030694_010 Hb_001478_070--Hb_030694_010 Hb_000078_160 Hb_000078_160 Hb_001478_070--Hb_000078_160 Hb_001421_030 Hb_001421_030 Hb_001478_070--Hb_001421_030 Hb_000465_130 Hb_000465_130 Hb_001478_070--Hb_000465_130 Hb_000635_110 Hb_000635_110 Hb_001478_070--Hb_000635_110 Hb_078081_010 Hb_078081_010 Hb_000186_290--Hb_078081_010 Hb_002739_040 Hb_002739_040 Hb_000186_290--Hb_002739_040 Hb_164926_040 Hb_164926_040 Hb_000186_290--Hb_164926_040 Hb_000116_120 Hb_000116_120 Hb_000186_290--Hb_000116_120 Hb_000186_290--Hb_004346_010 Hb_021409_140 Hb_021409_140 Hb_000186_290--Hb_021409_140 Hb_002592_050 Hb_002592_050 Hb_003050_100--Hb_002592_050 Hb_032208_050 Hb_032208_050 Hb_003050_100--Hb_032208_050 Hb_001178_090 Hb_001178_090 Hb_003050_100--Hb_001178_090 Hb_005839_030 Hb_005839_030 Hb_003050_100--Hb_005839_030 Hb_000032_430 Hb_000032_430 Hb_003050_100--Hb_000032_430 Hb_001564_090 Hb_001564_090 Hb_003050_100--Hb_001564_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0664503 0.0279427 0.335365 1.29868 0.0957407 0.212235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0602523 0 1.2482 0.598633

CAGE analysis