Hb_001894_010

Information

Type -
Description -
Location Contig1894: 12975-16094
Sequence    

Annotation

kegg
ID rcu:RCOM_0528500
description Polygalacturonase-1 non-catalytic subunit beta precursor, putative
nr
ID XP_012085373.1
description PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
swissprot
ID Q40161
description Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1
trembl
ID A0A067JRJ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17739 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18800: 12929-16093
cDNA
(Sanger)
(ID:Location)		 016_D08.ab1: 13657-14408

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001894_010 0.0 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
2 Hb_003092_050 0.1205256037 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
3 Hb_005485_070 0.1215216737 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
4 Hb_000590_070 0.1247720795 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
5 Hb_002527_060 0.1262414753 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
6 Hb_000120_740 0.1295664616 desease resistance Gene Name: VARLMGL conserved hypothetical protein [Ricinus communis]
7 Hb_036388_010 0.129602671 - - PREDICTED: formate--tetrahydrofolate ligase [Populus euphratica]
8 Hb_005181_060 0.1306127506 - - ATP-citrate synthase, putative [Ricinus communis]
9 Hb_001277_400 0.1383104245 transcription factor TF Family: Tify PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
10 Hb_000116_240 0.1385480799 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
11 Hb_000594_140 0.1405604649 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]
12 Hb_001439_010 0.1413684289 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 5-like [Jatropha curcas]
13 Hb_000107_550 0.1426717986 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
14 Hb_000318_170 0.1454980844 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
15 Hb_000997_290 0.1465290783 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
16 Hb_000680_070 0.1497150355 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]
17 Hb_189003_070 0.1499203578 - - PREDICTED: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like [Jatropha curcas]
18 Hb_003607_140 0.1511093325 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
19 Hb_004958_020 0.1512318489 - - PREDICTED: uncharacterized protein LOC104609039 [Nelumbo nucifera]
20 Hb_004032_110 0.1516508694 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001894_010 Hb_001894_010 Hb_003092_050 Hb_003092_050 Hb_001894_010--Hb_003092_050 Hb_005485_070 Hb_005485_070 Hb_001894_010--Hb_005485_070 Hb_000590_070 Hb_000590_070 Hb_001894_010--Hb_000590_070 Hb_002527_060 Hb_002527_060 Hb_001894_010--Hb_002527_060 Hb_000120_740 Hb_000120_740 Hb_001894_010--Hb_000120_740 Hb_036388_010 Hb_036388_010 Hb_001894_010--Hb_036388_010 Hb_000215_250 Hb_000215_250 Hb_003092_050--Hb_000215_250 Hb_000107_550 Hb_000107_550 Hb_003092_050--Hb_000107_550 Hb_000139_510 Hb_000139_510 Hb_003092_050--Hb_000139_510 Hb_005181_060 Hb_005181_060 Hb_003092_050--Hb_005181_060 Hb_013848_030 Hb_013848_030 Hb_003092_050--Hb_013848_030 Hb_000116_240 Hb_000116_240 Hb_005485_070--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_005485_070--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_000590_070--Hb_005181_060 Hb_000590_070--Hb_000116_240 Hb_007317_020 Hb_007317_020 Hb_000590_070--Hb_007317_020 Hb_000309_030 Hb_000309_030 Hb_000590_070--Hb_000309_030 Hb_000590_070--Hb_000120_740 Hb_002527_060--Hb_005181_060 Hb_002527_060--Hb_000590_070 Hb_001619_030 Hb_001619_030 Hb_002527_060--Hb_001619_030 Hb_002527_060--Hb_005485_070 Hb_002739_040 Hb_002739_040 Hb_002527_060--Hb_002739_040 Hb_000120_740--Hb_036388_010 Hb_004326_010 Hb_004326_010 Hb_000120_740--Hb_004326_010 Hb_001105_130 Hb_001105_130 Hb_000120_740--Hb_001105_130 Hb_035834_010 Hb_035834_010 Hb_000120_740--Hb_035834_010 Hb_009193_010 Hb_009193_010 Hb_000120_740--Hb_009193_010 Hb_000768_150 Hb_000768_150 Hb_036388_010--Hb_000768_150 Hb_036388_010--Hb_035834_010 Hb_003783_050 Hb_003783_050 Hb_036388_010--Hb_003783_050 Hb_000997_320 Hb_000997_320 Hb_036388_010--Hb_000997_320 Hb_006736_050 Hb_006736_050 Hb_036388_010--Hb_006736_050 Hb_000417_380 Hb_000417_380 Hb_036388_010--Hb_000417_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.10595 21.7191 45.4205 77.9918 4.60629 4.77983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94829 1.72036 3.06387 71.2263 77.2172

CAGE analysis