Hb_000635_110

Information

Type -
Description -
Location Contig635: 61221-64554
Sequence    

Annotation

kegg
ID rcu:RCOM_1080590
description ELMO domain-containing protein, putative
nr
ID XP_002514926.1
description ELMO domain-containing protein, putative [Ricinus communis]
swissprot
ID Q54YW1
description ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1
trembl
ID B9RMF7
description ELMO domain-containing protein, putative OS=Ricinus communis GN=RCOM_1080590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000635_110 0.0 - - ELMO domain-containing protein, putative [Ricinus communis]
2 Hb_005168_020 0.1597370779 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
3 Hb_000668_050 0.1741895679 - - phosphoglycerate mutase, putative [Ricinus communis]
4 Hb_017358_050 0.1785974913 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
5 Hb_006916_130 0.1810156922 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
6 Hb_116190_010 0.1848339776 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
7 Hb_026419_010 0.1850746658 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
8 Hb_006499_020 0.1878491241 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
9 Hb_001832_140 0.1881757742 - - endomembrane protein 70 family protein [Medicago truncatula]
10 Hb_002851_070 0.1898501127 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
11 Hb_010334_050 0.1920937685 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007382_080 0.1938535047 - - glutaredoxin, grx, putative [Ricinus communis]
13 Hb_000951_090 0.1955559646 - - Oligopeptide transporter, putative [Ricinus communis]
14 Hb_023771_030 0.1963245726 - - unnamed protein product [Vitis vinifera]
15 Hb_000226_110 0.199345254 - - -
16 Hb_000152_120 0.2005724044 - - alpha-l-fucosidase, putative [Ricinus communis]
17 Hb_168561_010 0.2017131468 - - PREDICTED: notchless protein homolog [Jatropha curcas]
18 Hb_019278_010 0.2023458831 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
19 Hb_001473_060 0.202839953 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
20 Hb_000337_030 0.2037754711 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000635_110 Hb_000635_110 Hb_005168_020 Hb_005168_020 Hb_000635_110--Hb_005168_020 Hb_000668_050 Hb_000668_050 Hb_000635_110--Hb_000668_050 Hb_017358_050 Hb_017358_050 Hb_000635_110--Hb_017358_050 Hb_006916_130 Hb_006916_130 Hb_000635_110--Hb_006916_130 Hb_116190_010 Hb_116190_010 Hb_000635_110--Hb_116190_010 Hb_026419_010 Hb_026419_010 Hb_000635_110--Hb_026419_010 Hb_005663_090 Hb_005663_090 Hb_005168_020--Hb_005663_090 Hb_000951_090 Hb_000951_090 Hb_005168_020--Hb_000951_090 Hb_002072_040 Hb_002072_040 Hb_005168_020--Hb_002072_040 Hb_000337_030 Hb_000337_030 Hb_005168_020--Hb_000337_030 Hb_000714_060 Hb_000714_060 Hb_005168_020--Hb_000714_060 Hb_000152_120 Hb_000152_120 Hb_005168_020--Hb_000152_120 Hb_001473_060 Hb_001473_060 Hb_000668_050--Hb_001473_060 Hb_007684_010 Hb_007684_010 Hb_000668_050--Hb_007684_010 Hb_003189_010 Hb_003189_010 Hb_000668_050--Hb_003189_010 Hb_000668_050--Hb_000714_060 Hb_003754_020 Hb_003754_020 Hb_000668_050--Hb_003754_020 Hb_000668_050--Hb_000951_090 Hb_007382_080 Hb_007382_080 Hb_017358_050--Hb_007382_080 Hb_023771_030 Hb_023771_030 Hb_017358_050--Hb_023771_030 Hb_017358_050--Hb_006916_130 Hb_000359_180 Hb_000359_180 Hb_017358_050--Hb_000359_180 Hb_000077_300 Hb_000077_300 Hb_017358_050--Hb_000077_300 Hb_002217_060 Hb_002217_060 Hb_017358_050--Hb_002217_060 Hb_006916_130--Hb_023771_030 Hb_012813_020 Hb_012813_020 Hb_006916_130--Hb_012813_020 Hb_002851_070 Hb_002851_070 Hb_006916_130--Hb_002851_070 Hb_005050_030 Hb_005050_030 Hb_006916_130--Hb_005050_030 Hb_002151_150 Hb_002151_150 Hb_006916_130--Hb_002151_150 Hb_000373_060 Hb_000373_060 Hb_116190_010--Hb_000373_060 Hb_003861_090 Hb_003861_090 Hb_116190_010--Hb_003861_090 Hb_006499_020 Hb_006499_020 Hb_116190_010--Hb_006499_020 Hb_010334_050 Hb_010334_050 Hb_116190_010--Hb_010334_050 Hb_000226_110 Hb_000226_110 Hb_116190_010--Hb_000226_110 Hb_168561_010 Hb_168561_010 Hb_116190_010--Hb_168561_010 Hb_026419_010--Hb_000226_110 Hb_004709_030 Hb_004709_030 Hb_026419_010--Hb_004709_030 Hb_019278_010 Hb_019278_010 Hb_026419_010--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_026419_010--Hb_000087_120 Hb_000365_440 Hb_000365_440 Hb_026419_010--Hb_000365_440 Hb_000230_020 Hb_000230_020 Hb_026419_010--Hb_000230_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.344614 0.29314 0 0.0366905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.352034 0.21771

CAGE analysis