Hb_007382_080

Information

Type -
Description -
Location Contig7382: 45889-46305
Sequence    

Annotation

kegg
ID rcu:RCOM_1078780
description glutaredoxin, grx, putative
nr
ID XP_002514866.1
description glutaredoxin, grx, putative [Ricinus communis]
swissprot
ID Q8LF89
description Glutaredoxin-C8 OS=Arabidopsis thaliana GN=GRXC8 PE=1 SV=2
trembl
ID B9RM97
description Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_1078780 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin-c1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56257: 45953-46350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007382_080 0.0 - - glutaredoxin, grx, putative [Ricinus communis]
2 Hb_017358_050 0.0382919546 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
3 Hb_000343_220 0.1258234925 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
4 Hb_000490_040 0.1388652353 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
5 Hb_003902_070 0.1444087411 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000077_300 0.1452170242 - - PREDICTED: expansin-B3-like [Jatropha curcas]
7 Hb_000359_180 0.1472921413 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006711_040 0.1485878204 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
9 Hb_001473_060 0.149150891 - - PREDICTED: gibberellin 2-beta-dioxygenase 8 [Jatropha curcas]
10 Hb_080147_070 0.1505719973 - - Rop5 [Hevea brasiliensis]
11 Hb_004330_040 0.1516354571 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000030_080 0.1540216679 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
13 Hb_002217_060 0.1548364029 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
14 Hb_002700_030 0.1561737519 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
15 Hb_023771_030 0.1562012875 - - unnamed protein product [Vitis vinifera]
16 Hb_001369_550 0.1573865058 - - 21 kDa protein precursor, putative [Ricinus communis]
17 Hb_000272_010 0.1578715542 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
18 Hb_001263_030 0.1588195643 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
19 Hb_000260_670 0.1614763465 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
20 Hb_001284_070 0.1630179096 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_007382_080 Hb_007382_080 Hb_017358_050 Hb_017358_050 Hb_007382_080--Hb_017358_050 Hb_000343_220 Hb_000343_220 Hb_007382_080--Hb_000343_220 Hb_000490_040 Hb_000490_040 Hb_007382_080--Hb_000490_040 Hb_003902_070 Hb_003902_070 Hb_007382_080--Hb_003902_070 Hb_000077_300 Hb_000077_300 Hb_007382_080--Hb_000077_300 Hb_000359_180 Hb_000359_180 Hb_007382_080--Hb_000359_180 Hb_023771_030 Hb_023771_030 Hb_017358_050--Hb_023771_030 Hb_006916_130 Hb_006916_130 Hb_017358_050--Hb_006916_130 Hb_017358_050--Hb_000359_180 Hb_017358_050--Hb_000077_300 Hb_002217_060 Hb_002217_060 Hb_017358_050--Hb_002217_060 Hb_001252_050 Hb_001252_050 Hb_000343_220--Hb_001252_050 Hb_006711_040 Hb_006711_040 Hb_000343_220--Hb_006711_040 Hb_002081_190 Hb_002081_190 Hb_000343_220--Hb_002081_190 Hb_000343_220--Hb_000490_040 Hb_000272_010 Hb_000272_010 Hb_000343_220--Hb_000272_010 Hb_000128_050 Hb_000128_050 Hb_000343_220--Hb_000128_050 Hb_000490_040--Hb_006711_040 Hb_009535_010 Hb_009535_010 Hb_000490_040--Hb_009535_010 Hb_002276_250 Hb_002276_250 Hb_000490_040--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_000490_040--Hb_004357_030 Hb_000535_040 Hb_000535_040 Hb_000490_040--Hb_000535_040 Hb_000030_080 Hb_000030_080 Hb_003902_070--Hb_000030_080 Hb_004592_030 Hb_004592_030 Hb_003902_070--Hb_004592_030 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_003902_070--Hb_000077_300 Hb_001454_270 Hb_001454_270 Hb_003902_070--Hb_001454_270 Hb_002757_010 Hb_002757_010 Hb_003902_070--Hb_002757_010 Hb_000077_300--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000077_300--Hb_002700_030 Hb_001310_060 Hb_001310_060 Hb_000077_300--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_000077_300--Hb_080147_070 Hb_000205_180 Hb_000205_180 Hb_000077_300--Hb_000205_180 Hb_002805_180 Hb_002805_180 Hb_000359_180--Hb_002805_180 Hb_000732_220 Hb_000732_220 Hb_000359_180--Hb_000732_220 Hb_000359_180--Hb_001310_060 Hb_000359_180--Hb_000077_300 Hb_004832_010 Hb_004832_010 Hb_000359_180--Hb_004832_010 Hb_004592_010 Hb_004592_010 Hb_000359_180--Hb_004592_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.06749 0.778451 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.553786 0.25777

CAGE analysis