Hb_009535_010

Information

Type -
Description -
Location Contig9535: 4288-11159
Sequence    

Annotation

kegg
ID rcu:RCOM_1449150
description DNA replication licensing factor MCM4, putative
nr
ID XP_012067200.1
description PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
swissprot
ID Q0WVF5
description DNA replication licensing factor MCM4 OS=Arabidopsis thaliana GN=MCM4 PE=1 SV=1
trembl
ID A0A067KZY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26759 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna replication licensing factor mcm4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009535_010 0.0 - - PREDICTED: DNA replication licensing factor MCM4 [Jatropha curcas]
2 Hb_000490_040 0.1114589276 - - PREDICTED: cyclin-D3-1 [Jatropha curcas]
3 Hb_000272_010 0.1263883299 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
4 Hb_006711_040 0.1280262596 - - PREDICTED: probable protein ABIL5 [Jatropha curcas]
5 Hb_000343_220 0.1294809556 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]
6 Hb_000535_040 0.1397916041 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
7 Hb_001252_050 0.1557127756 - - Wall-associated receptor kinase-like 20 [Morus notabilis]
8 Hb_008143_060 0.1584336972 - - PREDICTED: putative hydrolase C777.06c isoform X2 [Jatropha curcas]
9 Hb_000094_230 0.1584634054 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
10 Hb_000260_670 0.1606185825 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
11 Hb_000979_070 0.1632955054 - - PREDICTED: endoglucanase 8-like [Jatropha curcas]
12 Hb_001782_100 0.163518602 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
13 Hb_002081_190 0.1661242213 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
14 Hb_001263_030 0.1664477723 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
15 Hb_001366_380 0.1667257779 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
16 Hb_007382_080 0.1667684033 - - glutaredoxin, grx, putative [Ricinus communis]
17 Hb_002276_250 0.1710925903 - - PREDICTED: WD repeat and HMG-box DNA-binding protein 1 isoform X2 [Jatropha curcas]
18 Hb_080147_070 0.1737096157 - - Rop5 [Hevea brasiliensis]
19 Hb_001269_120 0.1750805758 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
20 Hb_000417_140 0.1768228601 - - PREDICTED: nucleobase-ascorbate transporter 2 [Jatropha curcas]

Gene co-expression network

sample Hb_009535_010 Hb_009535_010 Hb_000490_040 Hb_000490_040 Hb_009535_010--Hb_000490_040 Hb_000272_010 Hb_000272_010 Hb_009535_010--Hb_000272_010 Hb_006711_040 Hb_006711_040 Hb_009535_010--Hb_006711_040 Hb_000343_220 Hb_000343_220 Hb_009535_010--Hb_000343_220 Hb_000535_040 Hb_000535_040 Hb_009535_010--Hb_000535_040 Hb_001252_050 Hb_001252_050 Hb_009535_010--Hb_001252_050 Hb_000490_040--Hb_006711_040 Hb_000490_040--Hb_000343_220 Hb_002276_250 Hb_002276_250 Hb_000490_040--Hb_002276_250 Hb_004357_030 Hb_004357_030 Hb_000490_040--Hb_004357_030 Hb_000490_040--Hb_000535_040 Hb_001366_380 Hb_001366_380 Hb_000272_010--Hb_001366_380 Hb_000260_670 Hb_000260_670 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000272_010--Hb_000535_040 Hb_000272_010--Hb_000343_220 Hb_000272_010--Hb_006711_040 Hb_006711_040--Hb_000343_220 Hb_008143_060 Hb_008143_060 Hb_006711_040--Hb_008143_060 Hb_006711_040--Hb_001252_050 Hb_001832_140 Hb_001832_140 Hb_006711_040--Hb_001832_140 Hb_000343_220--Hb_001252_050 Hb_002081_190 Hb_002081_190 Hb_000343_220--Hb_002081_190 Hb_000128_050 Hb_000128_050 Hb_000343_220--Hb_000128_050 Hb_000094_230 Hb_000094_230 Hb_000535_040--Hb_000094_230 Hb_008143_050 Hb_008143_050 Hb_000535_040--Hb_008143_050 Hb_001782_100 Hb_001782_100 Hb_000535_040--Hb_001782_100 Hb_001263_030 Hb_001263_030 Hb_000535_040--Hb_001263_030 Hb_000979_070 Hb_000979_070 Hb_000535_040--Hb_000979_070 Hb_001252_050--Hb_008143_050 Hb_000696_250 Hb_000696_250 Hb_001252_050--Hb_000696_250 Hb_000417_140 Hb_000417_140 Hb_001252_050--Hb_000417_140 Hb_001252_050--Hb_008143_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0408479 0.0148242 0.551453 0.451319 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.336232 0.0619764

CAGE analysis