Hb_030694_010

Information

Type -
Description -
Location Contig30694: 264-3517
Sequence    

Annotation

kegg
ID sot:102596032
description endoglucanase 25-like
nr
ID XP_006358489.1
description PREDICTED: endoglucanase 25-like [Solanum tuberosum]
swissprot
ID P0C1U4
description Endoglucanase 9 OS=Oryza sativa subsp. japonica GN=GLU1 PE=2 SV=1
trembl
ID M1BJV8
description Endoglucanase OS=Solanum tuberosum GN=PGSC0003DMG400018224 PE=3 SV=1
Gene Ontology
ID GO:0004553
description endo- -beta-glucanase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32400: 881-2071 , PASA_asmbl_32401: 2309-2419
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030694_010 0.0 - - PREDICTED: endoglucanase 25-like [Solanum tuberosum]
2 Hb_001478_070 0.137452403 - - PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
3 Hb_000803_120 0.1842629011 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
4 Hb_002093_050 0.1915757512 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
5 Hb_153257_010 0.1928234243 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
6 Hb_000078_160 0.1979523788 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
7 Hb_003050_100 0.2008626458 - - PREDICTED: uncharacterized protein LOC105633987 [Jatropha curcas]
8 Hb_000424_100 0.2014216994 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
9 Hb_001474_010 0.2035877129 - - PREDICTED: synaptotagmin-3 isoform X1 [Jatropha curcas]
10 Hb_005839_030 0.2055291806 - - PREDICTED: potassium transporter 2 [Jatropha curcas]
11 Hb_005485_070 0.2066130129 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
12 Hb_005618_130 0.2071453118 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
13 Hb_000164_150 0.2079694106 - - serine/threonine-specific protein kinase, putative [Ricinus communis]
14 Hb_000465_130 0.2098118803 transcription factor TF Family: ERF hypothetical protein POPTR_0001s15550g [Populus trichocarpa]
15 Hb_002301_250 0.2161126734 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
16 Hb_001252_070 0.2174502284 - - hypothetical protein JCGZ_01385 [Jatropha curcas]
17 Hb_188281_050 0.2182729222 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
18 Hb_003106_230 0.2207504084 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
19 Hb_004846_080 0.2259766894 - - DNA replication licensing factor MCM3, putative [Ricinus communis]
20 Hb_002235_190 0.2271655785 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_030694_010 Hb_030694_010 Hb_001478_070 Hb_001478_070 Hb_030694_010--Hb_001478_070 Hb_000803_120 Hb_000803_120 Hb_030694_010--Hb_000803_120 Hb_002093_050 Hb_002093_050 Hb_030694_010--Hb_002093_050 Hb_153257_010 Hb_153257_010 Hb_030694_010--Hb_153257_010 Hb_000078_160 Hb_000078_160 Hb_030694_010--Hb_000078_160 Hb_003050_100 Hb_003050_100 Hb_030694_010--Hb_003050_100 Hb_001478_070--Hb_000078_160 Hb_001652_030 Hb_001652_030 Hb_001478_070--Hb_001652_030 Hb_001421_030 Hb_001421_030 Hb_001478_070--Hb_001421_030 Hb_000465_130 Hb_000465_130 Hb_001478_070--Hb_000465_130 Hb_000635_110 Hb_000635_110 Hb_001478_070--Hb_000635_110 Hb_007575_030 Hb_007575_030 Hb_000803_120--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_000803_120--Hb_000309_030 Hb_005694_180 Hb_005694_180 Hb_000803_120--Hb_005694_180 Hb_000661_220 Hb_000661_220 Hb_000803_120--Hb_000661_220 Hb_004297_090 Hb_004297_090 Hb_000803_120--Hb_004297_090 Hb_000567_090 Hb_000567_090 Hb_000803_120--Hb_000567_090 Hb_002093_050--Hb_153257_010 Hb_004746_010 Hb_004746_010 Hb_002093_050--Hb_004746_010 Hb_000406_090 Hb_000406_090 Hb_002093_050--Hb_000406_090 Hb_098315_090 Hb_098315_090 Hb_002093_050--Hb_098315_090 Hb_000823_010 Hb_000823_010 Hb_002093_050--Hb_000823_010 Hb_002093_050--Hb_000803_120 Hb_000139_510 Hb_000139_510 Hb_153257_010--Hb_000139_510 Hb_153257_010--Hb_000823_010 Hb_005485_070 Hb_005485_070 Hb_153257_010--Hb_005485_070 Hb_004096_220 Hb_004096_220 Hb_153257_010--Hb_004096_220 Hb_000261_310 Hb_000261_310 Hb_153257_010--Hb_000261_310 Hb_000078_160--Hb_000465_130 Hb_004846_080 Hb_004846_080 Hb_000078_160--Hb_004846_080 Hb_002311_460 Hb_002311_460 Hb_000078_160--Hb_002311_460 Hb_008143_060 Hb_008143_060 Hb_000078_160--Hb_008143_060 Hb_002592_050 Hb_002592_050 Hb_003050_100--Hb_002592_050 Hb_032208_050 Hb_032208_050 Hb_003050_100--Hb_032208_050 Hb_001178_090 Hb_001178_090 Hb_003050_100--Hb_001178_090 Hb_005839_030 Hb_005839_030 Hb_003050_100--Hb_005839_030 Hb_000032_430 Hb_000032_430 Hb_003050_100--Hb_000032_430 Hb_001564_090 Hb_001564_090 Hb_003050_100--Hb_001564_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0322962 0.392079 0.991243 1.14127 0.174219 0.434317
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.50131 0.376988

CAGE analysis