Hb_002311_460

Information

Type -
Description -
Location Contig2311: 245554-247284
Sequence    

Annotation

kegg
ID rcu:RCOM_1577330
description ubiquitin-protein ligase, putative
nr
ID XP_002513467.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9FJU2
description Putative FBD-associated F-box protein At5g56700 OS=Arabidopsis thaliana GN=At5g56700 PE=2 SV=2
trembl
ID B9RI98
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1577330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_460 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_003551_040 0.1365607818 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
3 Hb_000737_020 0.1368456226 - - -
4 Hb_154381_010 0.1371207061 - - -
5 Hb_001832_220 0.1774259514 - - -
6 Hb_000078_160 0.199411733 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
7 Hb_004885_020 0.201468895 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
8 Hb_012539_090 0.257305872 - - PREDICTED: LOW QUALITY PROTEIN: U-box domain-containing protein 26, partial [Eucalyptus grandis]
9 Hb_004242_210 0.258555766 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
10 Hb_030885_020 0.2650703882 - - -
11 Hb_160814_010 0.2788264562 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
12 Hb_004116_090 0.282346189 - - -
13 Hb_000002_150 0.2829599784 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005356_030 0.2838759183 - - protein binding protein, putative [Ricinus communis]
15 Hb_000127_050 0.2866290095 - - -
16 Hb_103452_010 0.287247516 - - hypothetical protein VITISV_027174 [Vitis vinifera]
17 Hb_001478_070 0.2872575372 - - PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
18 Hb_003858_050 0.2878707839 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
19 Hb_135673_010 0.2910678278 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
20 Hb_001006_050 0.2917047807 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]

Gene co-expression network

sample Hb_002311_460 Hb_002311_460 Hb_003551_040 Hb_003551_040 Hb_002311_460--Hb_003551_040 Hb_000737_020 Hb_000737_020 Hb_002311_460--Hb_000737_020 Hb_154381_010 Hb_154381_010 Hb_002311_460--Hb_154381_010 Hb_001832_220 Hb_001832_220 Hb_002311_460--Hb_001832_220 Hb_000078_160 Hb_000078_160 Hb_002311_460--Hb_000078_160 Hb_004885_020 Hb_004885_020 Hb_002311_460--Hb_004885_020 Hb_003551_040--Hb_154381_010 Hb_003551_040--Hb_001832_220 Hb_030885_020 Hb_030885_020 Hb_003551_040--Hb_030885_020 Hb_012539_090 Hb_012539_090 Hb_003551_040--Hb_012539_090 Hb_003551_040--Hb_000737_020 Hb_000737_020--Hb_001832_220 Hb_000743_070 Hb_000743_070 Hb_000737_020--Hb_000743_070 Hb_000127_050 Hb_000127_050 Hb_000737_020--Hb_000127_050 Hb_160814_010 Hb_160814_010 Hb_000737_020--Hb_160814_010 Hb_004785_150 Hb_004785_150 Hb_000737_020--Hb_004785_150 Hb_154381_010--Hb_001832_220 Hb_154381_010--Hb_030885_020 Hb_154381_010--Hb_012539_090 Hb_154381_010--Hb_000737_020 Hb_001832_220--Hb_012539_090 Hb_011609_200 Hb_011609_200 Hb_001832_220--Hb_011609_200 Hb_001478_070 Hb_001478_070 Hb_000078_160--Hb_001478_070 Hb_000465_130 Hb_000465_130 Hb_000078_160--Hb_000465_130 Hb_004846_080 Hb_004846_080 Hb_000078_160--Hb_004846_080 Hb_030694_010 Hb_030694_010 Hb_000078_160--Hb_030694_010 Hb_008143_060 Hb_008143_060 Hb_000078_160--Hb_008143_060 Hb_000191_160 Hb_000191_160 Hb_004885_020--Hb_000191_160 Hb_004885_020--Hb_000078_160 Hb_004885_020--Hb_154381_010 Hb_004885_020--Hb_003551_040 Hb_003025_010 Hb_003025_010 Hb_004885_020--Hb_003025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0221946 0.0348575 0 0.0146601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0311623 0

CAGE analysis