Hb_000737_020

Information

Type -
Description -
Location Contig737: 28930-29955
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56214: 29385-30085
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000737_020 0.0 - - -
2 Hb_002311_460 0.1368456226 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_001832_220 0.1803937125 - - -
4 Hb_000743_070 0.1896693487 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
5 Hb_000127_050 0.1934360416 - - -
6 Hb_160814_010 0.198673172 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
7 Hb_004785_150 0.2002052861 - - hypothetical protein JCGZ_25207 [Jatropha curcas]
8 Hb_020112_010 0.2032854462 - - acyltransferase, putative [Ricinus communis]
9 Hb_000496_080 0.2104267778 - - Proteinase inhibitor, putative [Ricinus communis]
10 Hb_010308_010 0.2109390781 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
11 Hb_004330_050 0.2117647246 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000329_570 0.2121039784 - - -
13 Hb_000046_550 0.2134972074 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
14 Hb_003858_050 0.2155568877 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
15 Hb_003551_040 0.2170751055 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
16 Hb_005305_170 0.2180569856 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
17 Hb_154381_010 0.2183525267 - - -
18 Hb_001300_060 0.2217435859 - - PREDICTED: monothiol glutaredoxin-S6-like [Jatropha curcas]
19 Hb_000705_110 0.2221373729 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
20 Hb_005551_070 0.2228570439 - - PREDICTED: uncharacterized protein LOC105635822 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000737_020 Hb_000737_020 Hb_002311_460 Hb_002311_460 Hb_000737_020--Hb_002311_460 Hb_001832_220 Hb_001832_220 Hb_000737_020--Hb_001832_220 Hb_000743_070 Hb_000743_070 Hb_000737_020--Hb_000743_070 Hb_000127_050 Hb_000127_050 Hb_000737_020--Hb_000127_050 Hb_160814_010 Hb_160814_010 Hb_000737_020--Hb_160814_010 Hb_004785_150 Hb_004785_150 Hb_000737_020--Hb_004785_150 Hb_003551_040 Hb_003551_040 Hb_002311_460--Hb_003551_040 Hb_154381_010 Hb_154381_010 Hb_002311_460--Hb_154381_010 Hb_002311_460--Hb_001832_220 Hb_000078_160 Hb_000078_160 Hb_002311_460--Hb_000078_160 Hb_004885_020 Hb_004885_020 Hb_002311_460--Hb_004885_020 Hb_012539_090 Hb_012539_090 Hb_001832_220--Hb_012539_090 Hb_001832_220--Hb_003551_040 Hb_001832_220--Hb_154381_010 Hb_011609_200 Hb_011609_200 Hb_001832_220--Hb_011609_200 Hb_000743_070--Hb_000127_050 Hb_020112_010 Hb_020112_010 Hb_000743_070--Hb_020112_010 Hb_000743_070--Hb_004785_150 Hb_000496_080 Hb_000496_080 Hb_000743_070--Hb_000496_080 Hb_010308_010 Hb_010308_010 Hb_000743_070--Hb_010308_010 Hb_004330_050 Hb_004330_050 Hb_000743_070--Hb_004330_050 Hb_000046_550 Hb_000046_550 Hb_000127_050--Hb_000046_550 Hb_003858_050 Hb_003858_050 Hb_000127_050--Hb_003858_050 Hb_005305_170 Hb_005305_170 Hb_000127_050--Hb_005305_170 Hb_005551_070 Hb_005551_070 Hb_000127_050--Hb_005551_070 Hb_000127_050--Hb_160814_010 Hb_000002_150 Hb_000002_150 Hb_160814_010--Hb_000002_150 Hb_000147_010 Hb_000147_010 Hb_160814_010--Hb_000147_010 Hb_160814_010--Hb_000743_070 Hb_000705_110 Hb_000705_110 Hb_160814_010--Hb_000705_110 Hb_160814_010--Hb_004785_150 Hb_000329_570 Hb_000329_570 Hb_004785_150--Hb_000329_570 Hb_004785_150--Hb_020112_010 Hb_004785_150--Hb_000496_080 Hb_004785_150--Hb_010308_010 Hb_001300_060 Hb_001300_060 Hb_004785_150--Hb_001300_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.200419 0.567863 0 0.0854819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.386104 0

CAGE analysis