Hb_004885_020

Information

Type -
Description -
Location Contig4885: 13541-23135
Sequence    

Annotation

kegg
ID rcu:RCOM_0605930
description alcohol dehydrogenase, putative (EC:1.3.1.74)
nr
ID XP_012075369.1
description PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
swissprot
ID Q9SLN8
description 2-alkenal reductase (NADP(+)-dependent) OS=Nicotiana tabacum GN=DBR PE=1 SV=1
trembl
ID A0A067KJD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10657 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004885_020 0.0 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
2 Hb_002311_460 0.201468895 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000191_160 0.2742063899 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
4 Hb_000078_160 0.2808686961 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
5 Hb_154381_010 0.2837124816 - - -
6 Hb_003551_040 0.2843923841 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
7 Hb_003025_010 0.3037227454 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
8 Hb_168855_010 0.3053198923 - - -
9 Hb_002053_040 0.306466001 - - PREDICTED: AT-hook motif nuclear-localized protein 24 [Jatropha curcas]
10 Hb_003480_010 0.3093457474 - - cytochrome P450 family protein [Populus trichocarpa]
11 Hb_012103_010 0.3098836747 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
12 Hb_001890_030 0.313871046 - - -
13 Hb_000737_020 0.313947069 - - -
14 Hb_027242_010 0.3227801383 - - PREDICTED: pathogenesis-related protein 1-like [Populus euphratica]
15 Hb_003020_340 0.3266302601 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
16 Hb_000705_330 0.3314005484 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
17 Hb_000057_210 0.3316466258 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
18 Hb_001478_070 0.3323472126 - - PREDICTED: uncharacterized protein LOC105789550 [Gossypium raimondii]
19 Hb_003119_120 0.3338025332 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Nicotiana sylvestris]
20 Hb_000679_280 0.3341398376 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]

Gene co-expression network

sample Hb_004885_020 Hb_004885_020 Hb_002311_460 Hb_002311_460 Hb_004885_020--Hb_002311_460 Hb_000191_160 Hb_000191_160 Hb_004885_020--Hb_000191_160 Hb_000078_160 Hb_000078_160 Hb_004885_020--Hb_000078_160 Hb_154381_010 Hb_154381_010 Hb_004885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_004885_020--Hb_003551_040 Hb_003025_010 Hb_003025_010 Hb_004885_020--Hb_003025_010 Hb_002311_460--Hb_003551_040 Hb_000737_020 Hb_000737_020 Hb_002311_460--Hb_000737_020 Hb_002311_460--Hb_154381_010 Hb_001832_220 Hb_001832_220 Hb_002311_460--Hb_001832_220 Hb_002311_460--Hb_000078_160 Hb_006920_040 Hb_006920_040 Hb_000191_160--Hb_006920_040 Hb_000191_160--Hb_003025_010 Hb_006054_020 Hb_006054_020 Hb_000191_160--Hb_006054_020 Hb_004102_050 Hb_004102_050 Hb_000191_160--Hb_004102_050 Hb_007527_030 Hb_007527_030 Hb_000191_160--Hb_007527_030 Hb_002553_100 Hb_002553_100 Hb_000191_160--Hb_002553_100 Hb_001478_070 Hb_001478_070 Hb_000078_160--Hb_001478_070 Hb_000465_130 Hb_000465_130 Hb_000078_160--Hb_000465_130 Hb_004846_080 Hb_004846_080 Hb_000078_160--Hb_004846_080 Hb_030694_010 Hb_030694_010 Hb_000078_160--Hb_030694_010 Hb_008143_060 Hb_008143_060 Hb_000078_160--Hb_008143_060 Hb_154381_010--Hb_003551_040 Hb_154381_010--Hb_001832_220 Hb_030885_020 Hb_030885_020 Hb_154381_010--Hb_030885_020 Hb_012539_090 Hb_012539_090 Hb_154381_010--Hb_012539_090 Hb_154381_010--Hb_000737_020 Hb_003551_040--Hb_001832_220 Hb_003551_040--Hb_030885_020 Hb_003551_040--Hb_012539_090 Hb_003551_040--Hb_000737_020 Hb_003025_010--Hb_006054_020 Hb_001921_020 Hb_001921_020 Hb_003025_010--Hb_001921_020 Hb_003025_010--Hb_004102_050 Hb_048476_010 Hb_048476_010 Hb_003025_010--Hb_048476_010 Hb_080147_060 Hb_080147_060 Hb_003025_010--Hb_080147_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0102864 0.00492782 0 0.00612964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0140149 0

CAGE analysis