Hb_001921_020

Information

Type desease resistance
Description Gene Name: LRR_8
Location Contig1921: 12573-23222
Sequence    

Annotation

kegg
ID pop:POPTR_0008s19190g
description POPTRDRAFT_766665; hypothetical protein
nr
ID XP_012085459.1
description PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
swissprot
ID Q8W3K3
description Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1
trembl
ID A0A067K4C5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17797 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19147: 13039-13492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001921_020 0.0 desease resistance Gene Name: LRR_8 PREDICTED: disease resistance protein RPM1-like isoform X2 [Jatropha curcas]
2 Hb_002374_110 0.1648062691 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
3 Hb_002843_010 0.1667917841 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
4 Hb_127743_030 0.1675199128 - - amino acid transporter, putative [Ricinus communis]
5 Hb_001723_070 0.1688964195 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
6 Hb_048476_010 0.171250251 - - PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Citrus sinensis]
7 Hb_007432_050 0.1729871276 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
8 Hb_003050_050 0.1731291104 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
9 Hb_000556_140 0.1749342404 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
10 Hb_004021_100 0.175628835 - - -
11 Hb_058526_010 0.1760472015 - - -
12 Hb_001221_480 0.1774876921 - - metal ion binding protein, putative [Ricinus communis]
13 Hb_003166_040 0.1815760081 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
14 Hb_003025_010 0.1859161475 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
15 Hb_013652_010 0.187180422 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_001959_030 0.1888824103 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004657_040 0.189419309 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
18 Hb_004452_080 0.1915249181 - - ring finger protein, putative [Ricinus communis]
19 Hb_008695_130 0.19186097 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000220_170 0.1920957988 - - -

Gene co-expression network

sample Hb_001921_020 Hb_001921_020 Hb_002374_110 Hb_002374_110 Hb_001921_020--Hb_002374_110 Hb_002843_010 Hb_002843_010 Hb_001921_020--Hb_002843_010 Hb_127743_030 Hb_127743_030 Hb_001921_020--Hb_127743_030 Hb_001723_070 Hb_001723_070 Hb_001921_020--Hb_001723_070 Hb_048476_010 Hb_048476_010 Hb_001921_020--Hb_048476_010 Hb_007432_050 Hb_007432_050 Hb_001921_020--Hb_007432_050 Hb_002374_110--Hb_127743_030 Hb_003166_040 Hb_003166_040 Hb_002374_110--Hb_003166_040 Hb_006919_010 Hb_006919_010 Hb_002374_110--Hb_006919_010 Hb_058526_010 Hb_058526_010 Hb_002374_110--Hb_058526_010 Hb_007483_030 Hb_007483_030 Hb_002374_110--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_002374_110--Hb_027288_010 Hb_002272_160 Hb_002272_160 Hb_002843_010--Hb_002272_160 Hb_002843_010--Hb_002374_110 Hb_002843_010--Hb_007432_050 Hb_002843_010--Hb_127743_030 Hb_007163_020 Hb_007163_020 Hb_002843_010--Hb_007163_020 Hb_002671_110 Hb_002671_110 Hb_002843_010--Hb_002671_110 Hb_127743_030--Hb_003166_040 Hb_127743_030--Hb_058526_010 Hb_127743_030--Hb_007432_050 Hb_127743_030--Hb_027288_010 Hb_127743_030--Hb_007483_030 Hb_162286_030 Hb_162286_030 Hb_001723_070--Hb_162286_030 Hb_009778_050 Hb_009778_050 Hb_001723_070--Hb_009778_050 Hb_010174_170 Hb_010174_170 Hb_001723_070--Hb_010174_170 Hb_004079_110 Hb_004079_110 Hb_001723_070--Hb_004079_110 Hb_002110_060 Hb_002110_060 Hb_001723_070--Hb_002110_060 Hb_001621_020 Hb_001621_020 Hb_001723_070--Hb_001621_020 Hb_002072_020 Hb_002072_020 Hb_048476_010--Hb_002072_020 Hb_027634_010 Hb_027634_010 Hb_048476_010--Hb_027634_010 Hb_001640_020 Hb_001640_020 Hb_048476_010--Hb_001640_020 Hb_001959_030 Hb_001959_030 Hb_048476_010--Hb_001959_030 Hb_004122_030 Hb_004122_030 Hb_048476_010--Hb_004122_030 Hb_007432_050--Hb_003166_040 Hb_022998_010 Hb_022998_010 Hb_007432_050--Hb_022998_010 Hb_000649_030 Hb_000649_030 Hb_007432_050--Hb_000649_030 Hb_007432_050--Hb_002374_110 Hb_007432_050--Hb_058526_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0316018 0.32691 0.233749 0.219684 0 0.0346363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.016236 0 0.94238 0

CAGE analysis