Hb_007527_030

Information

Type -
Description -
Location Contig7527: 15415-15672
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID K4CTQ6
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc09g059720.1 PE=4 SV=1
Gene Ontology
ID GO:0004751
description probable ribose-5-phosphate isomerase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007527_030 0.0 - - -
2 Hb_004102_050 0.2237894979 - - JHL25H03.10 [Jatropha curcas]
3 Hb_012052_030 0.2571319302 - - -
4 Hb_000191_160 0.2612762248 - - hypothetical protein EUGRSUZ_C03547 [Eucalyptus grandis]
5 Hb_006054_020 0.2619779058 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001486_140 0.2718534985 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
7 Hb_002837_100 0.2736472495 - - PREDICTED: F-box protein PP2-B15-like [Jatropha curcas]
8 Hb_002232_070 0.3038858569 - - PREDICTED: putative F-box/FBD/LRR-repeat protein At4g03220 [Malus domestica]
9 Hb_111834_020 0.3099089599 - - PREDICTED: protein phosphatase methylesterase 1 [Jatropha curcas]
10 Hb_000248_120 0.3138132073 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
11 Hb_002367_120 0.3176819995 - - -
12 Hb_147996_010 0.3224149473 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
13 Hb_003751_100 0.3241025337 - - Amino acid permease 2 [Glycine soja]
14 Hb_142734_020 0.3264753256 - - PREDICTED: uncharacterized protein LOC105764710 isoform X1 [Gossypium raimondii]
15 Hb_011377_010 0.3278914107 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
16 Hb_012103_010 0.3300972424 - - 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Theobroma cacao]
17 Hb_174514_010 0.3412229723 - - flavin-containing monooxygenase family protein [Populus trichocarpa]
18 Hb_003025_010 0.3467325753 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X2 [Populus euphratica]
19 Hb_000836_610 0.347471081 - - stem-specific protein TSJT1-like [Jatropha curcas]
20 Hb_048308_010 0.347837434 - - Peroxidase superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_007527_030 Hb_007527_030 Hb_004102_050 Hb_004102_050 Hb_007527_030--Hb_004102_050 Hb_012052_030 Hb_012052_030 Hb_007527_030--Hb_012052_030 Hb_000191_160 Hb_000191_160 Hb_007527_030--Hb_000191_160 Hb_006054_020 Hb_006054_020 Hb_007527_030--Hb_006054_020 Hb_001486_140 Hb_001486_140 Hb_007527_030--Hb_001486_140 Hb_002837_100 Hb_002837_100 Hb_007527_030--Hb_002837_100 Hb_004102_050--Hb_006054_020 Hb_003025_010 Hb_003025_010 Hb_004102_050--Hb_003025_010 Hb_004102_050--Hb_001486_140 Hb_004102_050--Hb_000191_160 Hb_011377_010 Hb_011377_010 Hb_004102_050--Hb_011377_010 Hb_012052_030--Hb_001486_140 Hb_004800_210 Hb_004800_210 Hb_012052_030--Hb_004800_210 Hb_002367_120 Hb_002367_120 Hb_012052_030--Hb_002367_120 Hb_057217_010 Hb_057217_010 Hb_012052_030--Hb_057217_010 Hb_007441_060 Hb_007441_060 Hb_012052_030--Hb_007441_060 Hb_006920_040 Hb_006920_040 Hb_000191_160--Hb_006920_040 Hb_000191_160--Hb_003025_010 Hb_000191_160--Hb_006054_020 Hb_002553_100 Hb_002553_100 Hb_000191_160--Hb_002553_100 Hb_006054_020--Hb_003025_010 Hb_001921_020 Hb_001921_020 Hb_006054_020--Hb_001921_020 Hb_046417_010 Hb_046417_010 Hb_006054_020--Hb_046417_010 Hb_006054_020--Hb_001486_140 Hb_005839_100 Hb_005839_100 Hb_001486_140--Hb_005839_100 Hb_001100_030 Hb_001100_030 Hb_001486_140--Hb_001100_030 Hb_147996_010 Hb_147996_010 Hb_001486_140--Hb_147996_010 Hb_000836_610 Hb_000836_610 Hb_001486_140--Hb_000836_610 Hb_001102_190 Hb_001102_190 Hb_002837_100--Hb_001102_190 Hb_002837_100--Hb_000836_610 Hb_007576_140 Hb_007576_140 Hb_002837_100--Hb_007576_140 Hb_002030_120 Hb_002030_120 Hb_002837_100--Hb_002030_120 Hb_000500_370 Hb_000500_370 Hb_002837_100--Hb_000500_370 Hb_011485_030 Hb_011485_030 Hb_002837_100--Hb_011485_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248553 0.821218 1.86134 0 0 0.747279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.47487 0

CAGE analysis