Hb_002837_100

Information

Type -
Description -
Location Contig2837: 114669-116234
Sequence    

Annotation

kegg
ID rcu:RCOM_1319770
description hypothetical protein
nr
ID XP_012071333.1
description PREDICTED: F-box protein PP2-B15-like [Jatropha curcas]
swissprot
ID O80494
description F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2
trembl
ID A0A067KRW8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05029 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29700: 114541-115001 , PASA_asmbl_29701: 115056-115458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002837_100 0.0 - - PREDICTED: F-box protein PP2-B15-like [Jatropha curcas]
2 Hb_001102_190 0.2490176755 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
3 Hb_000836_610 0.2596481727 - - stem-specific protein TSJT1-like [Jatropha curcas]
4 Hb_007576_140 0.2625256896 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
5 Hb_002030_120 0.2649457642 - - -
6 Hb_000500_370 0.2695891288 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_011485_030 0.2723600873 - - PREDICTED: uncharacterized protein LOC105647814 [Jatropha curcas]
8 Hb_007527_030 0.2736472495 - - -
9 Hb_008453_080 0.2760738708 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X2 [Jatropha curcas]
10 Hb_000165_070 0.2791625574 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
11 Hb_007123_080 0.2811697584 - - big map kinase/bmk, putative [Ricinus communis]
12 Hb_011377_010 0.2848599212 - - PREDICTED: nudix hydrolase 12, mitochondrial-like [Populus euphratica]
13 Hb_080147_020 0.2874427189 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
14 Hb_001240_050 0.2889735657 - - PREDICTED: CSC1-like protein At1g32090 [Jatropha curcas]
15 Hb_000567_090 0.2903972577 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
16 Hb_001486_140 0.2915107065 - - PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera]
17 Hb_001195_140 0.2920972297 - - PREDICTED: U-box domain-containing protein 5-like [Jatropha curcas]
18 Hb_014497_030 0.2923433802 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
19 Hb_075203_010 0.2928686766 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
20 Hb_001123_220 0.2934089313 - - -

Gene co-expression network

sample Hb_002837_100 Hb_002837_100 Hb_001102_190 Hb_001102_190 Hb_002837_100--Hb_001102_190 Hb_000836_610 Hb_000836_610 Hb_002837_100--Hb_000836_610 Hb_007576_140 Hb_007576_140 Hb_002837_100--Hb_007576_140 Hb_002030_120 Hb_002030_120 Hb_002837_100--Hb_002030_120 Hb_000500_370 Hb_000500_370 Hb_002837_100--Hb_000500_370 Hb_011485_030 Hb_011485_030 Hb_002837_100--Hb_011485_030 Hb_000345_290 Hb_000345_290 Hb_001102_190--Hb_000345_290 Hb_001102_190--Hb_000500_370 Hb_000212_300 Hb_000212_300 Hb_001102_190--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001102_190--Hb_000062_360 Hb_000803_090 Hb_000803_090 Hb_001102_190--Hb_000803_090 Hb_002794_040 Hb_002794_040 Hb_001102_190--Hb_002794_040 Hb_002641_050 Hb_002641_050 Hb_000836_610--Hb_002641_050 Hb_068492_010 Hb_068492_010 Hb_000836_610--Hb_068492_010 Hb_001842_060 Hb_001842_060 Hb_000836_610--Hb_001842_060 Hb_042083_060 Hb_042083_060 Hb_000836_610--Hb_042083_060 Hb_000051_030 Hb_000051_030 Hb_000836_610--Hb_000051_030 Hb_001195_220 Hb_001195_220 Hb_000836_610--Hb_001195_220 Hb_007576_140--Hb_001195_220 Hb_003659_010 Hb_003659_010 Hb_007576_140--Hb_003659_010 Hb_007123_080 Hb_007123_080 Hb_007576_140--Hb_007123_080 Hb_000679_110 Hb_000679_110 Hb_007576_140--Hb_000679_110 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_000567_090 Hb_000567_090 Hb_007576_140--Hb_000567_090 Hb_076233_030 Hb_076233_030 Hb_002030_120--Hb_076233_030 Hb_014497_030 Hb_014497_030 Hb_002030_120--Hb_014497_030 Hb_000189_390 Hb_000189_390 Hb_002030_120--Hb_000189_390 Hb_000985_040 Hb_000985_040 Hb_002030_120--Hb_000985_040 Hb_002030_120--Hb_000803_090 Hb_002249_040 Hb_002249_040 Hb_002030_120--Hb_002249_040 Hb_000462_080 Hb_000462_080 Hb_000500_370--Hb_000462_080 Hb_000500_370--Hb_002794_040 Hb_002540_070 Hb_002540_070 Hb_000500_370--Hb_002540_070 Hb_000500_370--Hb_007123_080 Hb_002400_050 Hb_002400_050 Hb_000500_370--Hb_002400_050 Hb_000181_270 Hb_000181_270 Hb_011485_030--Hb_000181_270 Hb_004920_050 Hb_004920_050 Hb_011485_030--Hb_004920_050 Hb_000288_090 Hb_000288_090 Hb_011485_030--Hb_000288_090 Hb_005901_030 Hb_005901_030 Hb_011485_030--Hb_005901_030 Hb_000566_130 Hb_000566_130 Hb_011485_030--Hb_000566_130 Hb_002518_200 Hb_002518_200 Hb_011485_030--Hb_002518_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0807602 0.189395 0.752255 0.0487064 0.0252447 0.182047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0618447 0 0 0.412476 0.0982421

CAGE analysis