Hb_001102_190

Information

Type -
Description -
Location Contig1102: 181112-181851
Sequence    

Annotation

kegg
ID rcu:RCOM_0494070
description hypothetical protein
nr
ID XP_011006814.1
description PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9SZ20
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0494070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03158: 181459-181875
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001102_190 0.0 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
2 Hb_000345_290 0.1480814087 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_000500_370 0.167430553 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
4 Hb_000212_300 0.1686666923 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
5 Hb_000062_360 0.1716580181 - - PREDICTED: DNA polymerase alpha subunit B [Jatropha curcas]
6 Hb_000803_090 0.1741281045 - - PREDICTED: transcription initiation factor IIB isoform X1 [Jatropha curcas]
7 Hb_002794_040 0.1750651914 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
8 Hb_124951_010 0.1778063273 - - chitinase-like protein [Hevea brasiliensis]
9 Hb_001247_210 0.1807429004 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003747_050 0.1809927172 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
11 Hb_000317_190 0.1811960155 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
12 Hb_007123_080 0.1821216205 - - big map kinase/bmk, putative [Ricinus communis]
13 Hb_000123_140 0.1824075426 - - PREDICTED: 21 kDa protein-like [Populus euphratica]
14 Hb_000230_480 0.1848465348 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
15 Hb_001369_030 0.1934248124 - - PREDICTED: ceramide kinase isoform X1 [Jatropha curcas]
16 Hb_011671_110 0.193828952 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
17 Hb_000959_190 0.195182624 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
18 Hb_014497_030 0.1952934481 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
19 Hb_004957_020 0.1957554115 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000363_350 0.1963828258 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_001102_190 Hb_001102_190 Hb_000345_290 Hb_000345_290 Hb_001102_190--Hb_000345_290 Hb_000500_370 Hb_000500_370 Hb_001102_190--Hb_000500_370 Hb_000212_300 Hb_000212_300 Hb_001102_190--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001102_190--Hb_000062_360 Hb_000803_090 Hb_000803_090 Hb_001102_190--Hb_000803_090 Hb_002794_040 Hb_002794_040 Hb_001102_190--Hb_002794_040 Hb_001369_030 Hb_001369_030 Hb_000345_290--Hb_001369_030 Hb_000345_290--Hb_000062_360 Hb_000345_290--Hb_000212_300 Hb_001322_020 Hb_001322_020 Hb_000345_290--Hb_001322_020 Hb_006555_040 Hb_006555_040 Hb_000345_290--Hb_006555_040 Hb_029622_030 Hb_029622_030 Hb_000345_290--Hb_029622_030 Hb_000462_080 Hb_000462_080 Hb_000500_370--Hb_000462_080 Hb_000500_370--Hb_002794_040 Hb_002540_070 Hb_002540_070 Hb_000500_370--Hb_002540_070 Hb_007123_080 Hb_007123_080 Hb_000500_370--Hb_007123_080 Hb_002400_050 Hb_002400_050 Hb_000500_370--Hb_002400_050 Hb_000212_300--Hb_001369_030 Hb_000212_300--Hb_000062_360 Hb_027380_210 Hb_027380_210 Hb_000212_300--Hb_027380_210 Hb_011671_110 Hb_011671_110 Hb_000212_300--Hb_011671_110 Hb_015026_020 Hb_015026_020 Hb_000212_300--Hb_015026_020 Hb_005941_020 Hb_005941_020 Hb_000212_300--Hb_005941_020 Hb_000062_360--Hb_001369_030 Hb_000062_360--Hb_001322_020 Hb_004267_060 Hb_004267_060 Hb_000062_360--Hb_004267_060 Hb_172257_010 Hb_172257_010 Hb_000062_360--Hb_172257_010 Hb_003470_040 Hb_003470_040 Hb_000062_360--Hb_003470_040 Hb_011609_010 Hb_011609_010 Hb_000803_090--Hb_011609_010 Hb_003747_050 Hb_003747_050 Hb_000803_090--Hb_003747_050 Hb_000008_390 Hb_000008_390 Hb_000803_090--Hb_000008_390 Hb_001624_040 Hb_001624_040 Hb_000803_090--Hb_001624_040 Hb_002301_210 Hb_002301_210 Hb_000803_090--Hb_002301_210 Hb_000631_090 Hb_000631_090 Hb_000803_090--Hb_000631_090 Hb_004846_230 Hb_004846_230 Hb_002794_040--Hb_004846_230 Hb_002435_090 Hb_002435_090 Hb_002794_040--Hb_002435_090 Hb_000392_240 Hb_000392_240 Hb_002794_040--Hb_000392_240 Hb_188739_010 Hb_188739_010 Hb_002794_040--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002794_040--Hb_001343_120 Hb_000046_520 Hb_000046_520 Hb_002794_040--Hb_000046_520
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137438 0.585257 1.72213 0.285699 0.181405 0.356763
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.213043 0.167421 0 0.344054 0.322093

CAGE analysis