Hb_000392_240

Information

Type -
Description -
Location Contig392: 216262-218715
Sequence    

Annotation

kegg
ID rcu:RCOM_1514810
description DNA binding protein, putative
nr
ID XP_002511561.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9SN74
description Transcription factor bHLH47 OS=Arabidopsis thaliana GN=BHLH47 PE=2 SV=1
trembl
ID B9R986
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1514810 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh47

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39259: 216852-218751
cDNA
(Sanger)
(ID:Location)		 008_M01.ab1: 216852-217745

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_240 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_005527_060 0.1320791757 - - malic enzyme, putative [Ricinus communis]
3 Hb_000446_040 0.1326649538 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
4 Hb_002942_120 0.1362974721 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
5 Hb_003106_200 0.1479452002 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
6 Hb_002794_040 0.1496581168 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
7 Hb_000011_560 0.1501401449 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
8 Hb_004846_230 0.1509087312 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
9 Hb_001922_110 0.1554462239 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003055_070 0.1575416549 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
11 Hb_107078_010 0.1612024842 - - -
12 Hb_001198_080 0.1612401722 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
13 Hb_000940_030 0.1614927463 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
14 Hb_000046_520 0.162529687 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
15 Hb_000928_250 0.1631284069 - - calcium ion binding protein, putative [Ricinus communis]
16 Hb_003398_040 0.16315552 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
17 Hb_000327_200 0.1651350086 - - glutathione-s-transferase omega, putative [Ricinus communis]
18 Hb_001141_050 0.1651883247 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
19 Hb_000009_420 0.1659000813 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
20 Hb_002432_050 0.1674659412 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]

Gene co-expression network

sample Hb_000392_240 Hb_000392_240 Hb_005527_060 Hb_005527_060 Hb_000392_240--Hb_005527_060 Hb_000446_040 Hb_000446_040 Hb_000392_240--Hb_000446_040 Hb_002942_120 Hb_002942_120 Hb_000392_240--Hb_002942_120 Hb_003106_200 Hb_003106_200 Hb_000392_240--Hb_003106_200 Hb_002794_040 Hb_002794_040 Hb_000392_240--Hb_002794_040 Hb_000011_560 Hb_000011_560 Hb_000392_240--Hb_000011_560 Hb_002432_050 Hb_002432_050 Hb_005527_060--Hb_002432_050 Hb_000310_060 Hb_000310_060 Hb_005527_060--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_005527_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_005527_060--Hb_001587_040 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_005527_060--Hb_000011_560 Hb_003055_070 Hb_003055_070 Hb_000446_040--Hb_003055_070 Hb_000933_110 Hb_000933_110 Hb_000446_040--Hb_000933_110 Hb_005015_020 Hb_005015_020 Hb_000446_040--Hb_005015_020 Hb_000334_050 Hb_000334_050 Hb_000446_040--Hb_000334_050 Hb_004346_040 Hb_004346_040 Hb_000446_040--Hb_004346_040 Hb_004324_120 Hb_004324_120 Hb_000446_040--Hb_004324_120 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_000928_250 Hb_000928_250 Hb_003106_200--Hb_000928_250 Hb_015026_020 Hb_015026_020 Hb_003106_200--Hb_015026_020 Hb_000818_120 Hb_000818_120 Hb_003106_200--Hb_000818_120 Hb_002249_170 Hb_002249_170 Hb_003106_200--Hb_002249_170 Hb_000032_200 Hb_000032_200 Hb_003106_200--Hb_000032_200 Hb_001198_080 Hb_001198_080 Hb_003106_200--Hb_001198_080 Hb_002794_040--Hb_004846_230 Hb_002435_090 Hb_002435_090 Hb_002794_040--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_002794_040--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002794_040--Hb_001343_120 Hb_000046_520 Hb_000046_520 Hb_002794_040--Hb_000046_520 Hb_004545_120 Hb_004545_120 Hb_000011_560--Hb_004545_120 Hb_000011_560--Hb_000310_060 Hb_000011_560--Hb_001587_040 Hb_000327_200 Hb_000327_200 Hb_000011_560--Hb_000327_200 Hb_003664_030 Hb_003664_030 Hb_000011_560--Hb_003664_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.01895 16.0411 59.2058 12.4644 1.80277 2.63179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3989 5.06669 3.04275 6.58862 24.1908

CAGE analysis