Hb_007123_080

Information

Type -
Description -
Location Contig7123: 138413-143702
Sequence    

Annotation

kegg
ID rcu:RCOM_0843380
description big map kinase/bmk, putative (EC:2.7.11.24)
nr
ID XP_002526023.1
description big map kinase/bmk, putative [Ricinus communis]
swissprot
ID Q5Z9J0
description Mitogen-activated protein kinase 12 OS=Oryza sativa subsp. japonica GN=MPK12 PE=1 SV=2
trembl
ID B9SJ54
description Mitogen-activated protein kinase OS=Ricinus communis GN=RCOM_0843380 PE=4 SV=1
Gene Ontology
ID GO:0004707
description map kinase 17 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55365: 138634-143687 , PASA_asmbl_55367: 138769-143687 , PASA_asmbl_55368: 138769-143614 , PASA_asmbl_55369: 141336-142727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007123_080 0.0 - - big map kinase/bmk, putative [Ricinus communis]
2 Hb_002540_070 0.1226058393 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
3 Hb_007576_140 0.1359542307 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
4 Hb_005527_060 0.1360109896 - - malic enzyme, putative [Ricinus communis]
5 Hb_004517_030 0.1377503295 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002942_120 0.1404898137 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
7 Hb_000032_200 0.1477167676 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
8 Hb_007545_110 0.1487255799 - - catalytic, putative [Ricinus communis]
9 Hb_003106_200 0.1489392899 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
10 Hb_001117_080 0.1535360608 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
11 Hb_000890_020 0.1536560561 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_000347_140 0.1540356093 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_004957_020 0.1549551113 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000088_240 0.1565918378 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
15 Hb_000181_270 0.157844569 - - ATP binding protein, putative [Ricinus communis]
16 Hb_003549_130 0.1579087279 - - neutral/alkaline invertase [Manihot esculenta]
17 Hb_000008_390 0.1590509274 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
18 Hb_003430_040 0.1594675102 - - spermidine synthase 1, putative [Ricinus communis]
19 Hb_000563_440 0.1604752493 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
20 Hb_002432_050 0.1615605332 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]

Gene co-expression network

sample Hb_007123_080 Hb_007123_080 Hb_002540_070 Hb_002540_070 Hb_007123_080--Hb_002540_070 Hb_007576_140 Hb_007576_140 Hb_007123_080--Hb_007576_140 Hb_005527_060 Hb_005527_060 Hb_007123_080--Hb_005527_060 Hb_004517_030 Hb_004517_030 Hb_007123_080--Hb_004517_030 Hb_002942_120 Hb_002942_120 Hb_007123_080--Hb_002942_120 Hb_000032_200 Hb_000032_200 Hb_007123_080--Hb_000032_200 Hb_000563_440 Hb_000563_440 Hb_002540_070--Hb_000563_440 Hb_000890_020 Hb_000890_020 Hb_002540_070--Hb_000890_020 Hb_002235_380 Hb_002235_380 Hb_002540_070--Hb_002235_380 Hb_000181_270 Hb_000181_270 Hb_002540_070--Hb_000181_270 Hb_002400_050 Hb_002400_050 Hb_002540_070--Hb_002400_050 Hb_001195_220 Hb_001195_220 Hb_007576_140--Hb_001195_220 Hb_003659_010 Hb_003659_010 Hb_007576_140--Hb_003659_010 Hb_000679_110 Hb_000679_110 Hb_007576_140--Hb_000679_110 Hb_025787_010 Hb_025787_010 Hb_007576_140--Hb_025787_010 Hb_000567_090 Hb_000567_090 Hb_007576_140--Hb_000567_090 Hb_002432_050 Hb_002432_050 Hb_005527_060--Hb_002432_050 Hb_000310_060 Hb_000310_060 Hb_005527_060--Hb_000310_060 Hb_003398_040 Hb_003398_040 Hb_005527_060--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_005527_060--Hb_001587_040 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560 Hb_000392_450 Hb_000392_450 Hb_004517_030--Hb_000392_450 Hb_000212_250 Hb_000212_250 Hb_004517_030--Hb_000212_250 Hb_007217_010 Hb_007217_010 Hb_004517_030--Hb_007217_010 Hb_001386_090 Hb_001386_090 Hb_004517_030--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_004517_030--Hb_003397_030 Hb_003874_010 Hb_003874_010 Hb_004517_030--Hb_003874_010 Hb_004218_050 Hb_004218_050 Hb_002942_120--Hb_004218_050 Hb_004846_230 Hb_004846_230 Hb_002942_120--Hb_004846_230 Hb_038044_010 Hb_038044_010 Hb_002942_120--Hb_038044_010 Hb_002942_120--Hb_005527_060 Hb_021346_050 Hb_021346_050 Hb_002942_120--Hb_021346_050 Hb_007943_180 Hb_007943_180 Hb_002942_120--Hb_007943_180 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_003106_200 Hb_003106_200 Hb_000032_200--Hb_003106_200 Hb_003430_040 Hb_003430_040 Hb_000032_200--Hb_003430_040 Hb_000347_140 Hb_000347_140 Hb_000032_200--Hb_000347_140 Hb_012787_030 Hb_012787_030 Hb_000032_200--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_000032_200--Hb_000732_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5383 44.4861 208.342 43.2249 11.3772 11.0237
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2609 16.1487 8.97874 50.4038 40.9589

CAGE analysis