Hb_000500_370

Information

Type -
Description -
Location Contig500: 276589-294394
Sequence    

Annotation

kegg
ID rcu:RCOM_1253000
description trehalose-6-phosphate synthase, putative (EC:2.4.1.15 3.1.3.12)
nr
ID XP_002522296.1
description trehalose-6-phosphate synthase, putative [Ricinus communis]
swissprot
ID Q9SYM4
description Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 OS=Arabidopsis thaliana GN=TPS1 PE=1 SV=1
trembl
ID B9S8H7
description Trehalose-6-phosphate synthase, putative OS=Ricinus communis GN=RCOM_1253000 PE=4 SV=1
Gene Ontology
ID GO:0003825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45782: 276893-277064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_370 0.0 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
2 Hb_001102_190 0.167430553 - - PREDICTED: uncharacterized protein LOC105112724 [Populus euphratica]
3 Hb_000462_080 0.1707174216 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
4 Hb_002794_040 0.1989085577 - - PREDICTED: C-type lectin receptor-like tyrosine-protein kinase At1g52310 [Jatropha curcas]
5 Hb_002540_070 0.2000444786 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
6 Hb_007123_080 0.2014322536 - - big map kinase/bmk, putative [Ricinus communis]
7 Hb_002400_050 0.2114740966 - - PREDICTED: uncharacterized protein LOC105637632 isoform X1 [Jatropha curcas]
8 Hb_002078_230 0.2117271775 - - PREDICTED: HORMA domain-containing protein 1 [Jatropha curcas]
9 Hb_002235_380 0.2127363931 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
10 Hb_002400_170 0.2151974033 - - PREDICTED: adenine phosphoribosyltransferase 5 [Jatropha curcas]
11 Hb_008173_060 0.2161879272 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
12 Hb_007545_110 0.2185051215 - - catalytic, putative [Ricinus communis]
13 Hb_000521_190 0.2207782281 desease resistance Gene Name: TIR hypothetical protein JCGZ_25500 [Jatropha curcas]
14 Hb_000134_030 0.2252393874 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
15 Hb_124951_010 0.2265689746 - - chitinase-like protein [Hevea brasiliensis]
16 Hb_005375_060 0.2272825846 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
17 Hb_004846_230 0.2275454616 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
18 Hb_003549_130 0.2308854984 - - neutral/alkaline invertase [Manihot esculenta]
19 Hb_000890_020 0.2310053959 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_014361_170 0.2331901699 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 37 [Jatropha curcas]

Gene co-expression network

sample Hb_000500_370 Hb_000500_370 Hb_001102_190 Hb_001102_190 Hb_000500_370--Hb_001102_190 Hb_000462_080 Hb_000462_080 Hb_000500_370--Hb_000462_080 Hb_002794_040 Hb_002794_040 Hb_000500_370--Hb_002794_040 Hb_002540_070 Hb_002540_070 Hb_000500_370--Hb_002540_070 Hb_007123_080 Hb_007123_080 Hb_000500_370--Hb_007123_080 Hb_002400_050 Hb_002400_050 Hb_000500_370--Hb_002400_050 Hb_000345_290 Hb_000345_290 Hb_001102_190--Hb_000345_290 Hb_000212_300 Hb_000212_300 Hb_001102_190--Hb_000212_300 Hb_000062_360 Hb_000062_360 Hb_001102_190--Hb_000062_360 Hb_000803_090 Hb_000803_090 Hb_001102_190--Hb_000803_090 Hb_001102_190--Hb_002794_040 Hb_005375_060 Hb_005375_060 Hb_000462_080--Hb_005375_060 Hb_001040_060 Hb_001040_060 Hb_000462_080--Hb_001040_060 Hb_007545_110 Hb_007545_110 Hb_000462_080--Hb_007545_110 Hb_002095_050 Hb_002095_050 Hb_000462_080--Hb_002095_050 Hb_008173_060 Hb_008173_060 Hb_000462_080--Hb_008173_060 Hb_004846_230 Hb_004846_230 Hb_002794_040--Hb_004846_230 Hb_002435_090 Hb_002435_090 Hb_002794_040--Hb_002435_090 Hb_000392_240 Hb_000392_240 Hb_002794_040--Hb_000392_240 Hb_188739_010 Hb_188739_010 Hb_002794_040--Hb_188739_010 Hb_001343_120 Hb_001343_120 Hb_002794_040--Hb_001343_120 Hb_000046_520 Hb_000046_520 Hb_002794_040--Hb_000046_520 Hb_002540_070--Hb_007123_080 Hb_000563_440 Hb_000563_440 Hb_002540_070--Hb_000563_440 Hb_000890_020 Hb_000890_020 Hb_002540_070--Hb_000890_020 Hb_002235_380 Hb_002235_380 Hb_002540_070--Hb_002235_380 Hb_000181_270 Hb_000181_270 Hb_002540_070--Hb_000181_270 Hb_002540_070--Hb_002400_050 Hb_007576_140 Hb_007576_140 Hb_007123_080--Hb_007576_140 Hb_005527_060 Hb_005527_060 Hb_007123_080--Hb_005527_060 Hb_004517_030 Hb_004517_030 Hb_007123_080--Hb_004517_030 Hb_002942_120 Hb_002942_120 Hb_007123_080--Hb_002942_120 Hb_000032_200 Hb_000032_200 Hb_007123_080--Hb_000032_200 Hb_002400_050--Hb_000890_020 Hb_000134_030 Hb_000134_030 Hb_002400_050--Hb_000134_030 Hb_000260_610 Hb_000260_610 Hb_002400_050--Hb_000260_610 Hb_002400_050--Hb_007545_110 Hb_002518_200 Hb_002518_200 Hb_002400_050--Hb_002518_200 Hb_002400_050--Hb_000181_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0225798 0.421813 1.43448 0.190382 0.0261079 0.125562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174025 0.0995941 0 0.261829 0.106081

CAGE analysis