Hb_005375_060

Information

Type -
Description -
Location Contig5375: 63159-65664
Sequence    

Annotation

kegg
ID rcu:RCOM_1340570
description ATP binding protein, putative
nr
ID XP_012083814.1
description PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
swissprot
ID Q8S8N4
description Probably inactive receptor-like protein kinase At2g46850 OS=Arabidopsis thaliana GN=At2g46850 PE=3 SV=1
trembl
ID B9RMV6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1340570 PE=4 SV=1
Gene Ontology
ID GO:0004713
description probably inactive receptor-like protein kinase at2g46850

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47616: 63370-63599 , PASA_asmbl_47617: 63618-64111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_060 0.0 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
2 Hb_001581_040 0.1413103999 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_007163_080 0.1434534998 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
4 Hb_002045_260 0.151724424 - - calmodulin, putative [Ricinus communis]
5 Hb_000462_080 0.1523767621 - - PREDICTED: quercetin 3-O-methyltransferase 1 [Jatropha curcas]
6 Hb_011622_010 0.1583612674 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
7 Hb_042098_010 0.160198324 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
8 Hb_001971_030 0.1645187879 - - PREDICTED: exonuclease 1 [Jatropha curcas]
9 Hb_006120_120 0.1686946643 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000656_120 0.1692044766 transcription factor TF Family: Tify JAZ2 [Hevea brasiliensis]
11 Hb_000771_040 0.1715967327 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like [Jatropha curcas]
12 Hb_004970_070 0.1726636128 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
13 Hb_000359_260 0.1739552778 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
14 Hb_002107_110 0.1743646712 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
15 Hb_000483_050 0.1763329437 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
16 Hb_004712_090 0.177459181 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]
17 Hb_007101_250 0.1777236596 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
18 Hb_000111_240 0.1797439682 - - PREDICTED: glutamate receptor 2.8-like [Elaeis guineensis]
19 Hb_001007_090 0.182187938 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
20 Hb_006478_140 0.1842143588 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]

Gene co-expression network

sample Hb_005375_060 Hb_005375_060 Hb_001581_040 Hb_001581_040 Hb_005375_060--Hb_001581_040 Hb_007163_080 Hb_007163_080 Hb_005375_060--Hb_007163_080 Hb_002045_260 Hb_002045_260 Hb_005375_060--Hb_002045_260 Hb_000462_080 Hb_000462_080 Hb_005375_060--Hb_000462_080 Hb_011622_010 Hb_011622_010 Hb_005375_060--Hb_011622_010 Hb_042098_010 Hb_042098_010 Hb_005375_060--Hb_042098_010 Hb_000771_040 Hb_000771_040 Hb_001581_040--Hb_000771_040 Hb_000111_240 Hb_000111_240 Hb_001581_040--Hb_000111_240 Hb_001581_040--Hb_042098_010 Hb_018633_010 Hb_018633_010 Hb_001581_040--Hb_018633_010 Hb_002995_010 Hb_002995_010 Hb_001581_040--Hb_002995_010 Hb_002107_110 Hb_002107_110 Hb_001581_040--Hb_002107_110 Hb_002151_130 Hb_002151_130 Hb_007163_080--Hb_002151_130 Hb_007163_080--Hb_011622_010 Hb_061908_030 Hb_061908_030 Hb_007163_080--Hb_061908_030 Hb_003751_100 Hb_003751_100 Hb_007163_080--Hb_003751_100 Hb_183192_010 Hb_183192_010 Hb_007163_080--Hb_183192_010 Hb_002157_100 Hb_002157_100 Hb_002045_260--Hb_002157_100 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_002045_260--Hb_042098_010 Hb_000656_120 Hb_000656_120 Hb_002045_260--Hb_000656_120 Hb_002374_360 Hb_002374_360 Hb_002045_260--Hb_002374_360 Hb_007017_110 Hb_007017_110 Hb_002045_260--Hb_007017_110 Hb_001040_060 Hb_001040_060 Hb_000462_080--Hb_001040_060 Hb_007545_110 Hb_007545_110 Hb_000462_080--Hb_007545_110 Hb_000500_370 Hb_000500_370 Hb_000462_080--Hb_000500_370 Hb_002095_050 Hb_002095_050 Hb_000462_080--Hb_002095_050 Hb_008173_060 Hb_008173_060 Hb_000462_080--Hb_008173_060 Hb_006478_140 Hb_006478_140 Hb_011622_010--Hb_006478_140 Hb_000604_080 Hb_000604_080 Hb_011622_010--Hb_000604_080 Hb_104641_010 Hb_104641_010 Hb_011622_010--Hb_104641_010 Hb_011622_010--Hb_002374_360 Hb_008080_030 Hb_008080_030 Hb_042098_010--Hb_008080_030 Hb_005628_050 Hb_005628_050 Hb_042098_010--Hb_005628_050 Hb_000001_010 Hb_000001_010 Hb_042098_010--Hb_000001_010 Hb_002774_180 Hb_002774_180 Hb_042098_010--Hb_002774_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0333167 1.64789 3.31188 0.667064 0.0192512 0.0459238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0467442 0.0735585 0.0348424 0.687933 0.116482

CAGE analysis