Hb_003751_100

Information

Type -
Description -
Location Contig3751: 104582-108229
Sequence    

Annotation

kegg
ID pxb:103934901
description amino acid permease 2-like
nr
ID KHN39882.1
description Amino acid permease 2 [Glycine soja]
swissprot
ID Q9C733
description Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2
trembl
ID A0A0B2S6H8
description Amino acid permease 2 OS=Glycine soja GN=glysoja_020622 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino acid permease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38311: 107524-107769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003751_100 0.0 - - Amino acid permease 2 [Glycine soja]
2 Hb_007163_080 0.1878350414 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]
3 Hb_005375_060 0.1884145783 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
4 Hb_003751_050 0.1885126458 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
5 Hb_002045_260 0.195544671 - - calmodulin, putative [Ricinus communis]
6 Hb_011622_010 0.2010378383 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
7 Hb_002374_360 0.2016882012 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
8 Hb_000893_050 0.2020585101 - - structural constituent of cell wall, putative [Ricinus communis]
9 Hb_001318_110 0.2063594986 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
10 Hb_001016_140 0.2087277246 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
11 Hb_000862_060 0.2108785558 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002157_100 0.2133438841 - - -
13 Hb_184008_010 0.2186484885 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]
14 Hb_008080_030 0.222359495 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
15 Hb_000001_010 0.226478686 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
16 Hb_052434_010 0.2307385977 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
17 Hb_042098_010 0.2350277976 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
18 Hb_164162_010 0.2367592367 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
19 Hb_007017_110 0.2404929546 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
20 Hb_006478_140 0.2449900794 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]

Gene co-expression network

sample Hb_003751_100 Hb_003751_100 Hb_007163_080 Hb_007163_080 Hb_003751_100--Hb_007163_080 Hb_005375_060 Hb_005375_060 Hb_003751_100--Hb_005375_060 Hb_003751_050 Hb_003751_050 Hb_003751_100--Hb_003751_050 Hb_002045_260 Hb_002045_260 Hb_003751_100--Hb_002045_260 Hb_011622_010 Hb_011622_010 Hb_003751_100--Hb_011622_010 Hb_002374_360 Hb_002374_360 Hb_003751_100--Hb_002374_360 Hb_007163_080--Hb_005375_060 Hb_002151_130 Hb_002151_130 Hb_007163_080--Hb_002151_130 Hb_007163_080--Hb_011622_010 Hb_061908_030 Hb_061908_030 Hb_007163_080--Hb_061908_030 Hb_183192_010 Hb_183192_010 Hb_007163_080--Hb_183192_010 Hb_001581_040 Hb_001581_040 Hb_005375_060--Hb_001581_040 Hb_005375_060--Hb_002045_260 Hb_000462_080 Hb_000462_080 Hb_005375_060--Hb_000462_080 Hb_005375_060--Hb_011622_010 Hb_042098_010 Hb_042098_010 Hb_005375_060--Hb_042098_010 Hb_000893_050 Hb_000893_050 Hb_003751_050--Hb_000893_050 Hb_003751_050--Hb_002374_360 Hb_000862_060 Hb_000862_060 Hb_003751_050--Hb_000862_060 Hb_008080_030 Hb_008080_030 Hb_003751_050--Hb_008080_030 Hb_000046_590 Hb_000046_590 Hb_003751_050--Hb_000046_590 Hb_006925_060 Hb_006925_060 Hb_003751_050--Hb_006925_060 Hb_002157_100 Hb_002157_100 Hb_002045_260--Hb_002157_100 Hb_006262_030 Hb_006262_030 Hb_002045_260--Hb_006262_030 Hb_002045_260--Hb_042098_010 Hb_000656_120 Hb_000656_120 Hb_002045_260--Hb_000656_120 Hb_002045_260--Hb_002374_360 Hb_007017_110 Hb_007017_110 Hb_002045_260--Hb_007017_110 Hb_006478_140 Hb_006478_140 Hb_011622_010--Hb_006478_140 Hb_000604_080 Hb_000604_080 Hb_011622_010--Hb_000604_080 Hb_104641_010 Hb_104641_010 Hb_011622_010--Hb_104641_010 Hb_011622_010--Hb_002374_360 Hb_002374_360--Hb_000862_060 Hb_002374_360--Hb_002157_100 Hb_005433_030 Hb_005433_030 Hb_002374_360--Hb_005433_030 Hb_002374_360--Hb_008080_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201106 2.05378 3.70945 0.547916 0.0588937 0.183613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0564763 0 0.125623 1.49699 0

CAGE analysis