Hb_003751_050

Information

Type -
Description -
Location Contig3751: 42959-45626
Sequence    

Annotation

kegg
ID vvi:100262462
description amino acid permease 3
nr
ID XP_012081757.1
description PREDICTED: amino acid permease 4-like [Jatropha curcas]
swissprot
ID Q38967
description Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1
trembl
ID A0A067KCT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18801 PE=4 SV=1
Gene Ontology
ID GO:0016021
description amino acid permease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38298: 44904-45276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003751_050 0.0 - - PREDICTED: amino acid permease 4-like [Jatropha curcas]
2 Hb_000893_050 0.1050651013 - - structural constituent of cell wall, putative [Ricinus communis]
3 Hb_002374_360 0.1223657146 - - hypothetical protein POPTR_0002s08300g [Populus trichocarpa]
4 Hb_000862_060 0.1389651606 - - conserved hypothetical protein [Ricinus communis]
5 Hb_008080_030 0.1501985771 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
6 Hb_000046_590 0.1548852561 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
7 Hb_006925_060 0.1551529636 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
8 Hb_002157_100 0.1701495226 - - -
9 Hb_005306_040 0.1721213655 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_002045_260 0.1738324687 - - calmodulin, putative [Ricinus communis]
11 Hb_055147_010 0.1840321045 - - thioredoxin H-type 7 [Hevea brasiliensis]
12 Hb_003751_100 0.1885126458 - - Amino acid permease 2 [Glycine soja]
13 Hb_001318_110 0.1904639595 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
14 Hb_000720_110 0.1913988543 - - hypothetical protein JCGZ_20628 [Jatropha curcas]
15 Hb_001832_240 0.1932329811 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_000343_280 0.1937310816 - - hypothetical protein JCGZ_24094 [Jatropha curcas]
17 Hb_005433_030 0.1949422289 transcription factor TF Family: MYB unnamed protein product [Vitis vinifera]
18 Hb_100873_040 0.1971756429 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
19 Hb_006262_030 0.1978431822 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_000130_080 0.1980202106 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003751_050 Hb_003751_050 Hb_000893_050 Hb_000893_050 Hb_003751_050--Hb_000893_050 Hb_002374_360 Hb_002374_360 Hb_003751_050--Hb_002374_360 Hb_000862_060 Hb_000862_060 Hb_003751_050--Hb_000862_060 Hb_008080_030 Hb_008080_030 Hb_003751_050--Hb_008080_030 Hb_000046_590 Hb_000046_590 Hb_003751_050--Hb_000046_590 Hb_006925_060 Hb_006925_060 Hb_003751_050--Hb_006925_060 Hb_000893_050--Hb_002374_360 Hb_000893_050--Hb_006925_060 Hb_000893_050--Hb_000862_060 Hb_055147_010 Hb_055147_010 Hb_000893_050--Hb_055147_010 Hb_000893_050--Hb_000046_590 Hb_002374_360--Hb_000862_060 Hb_002157_100 Hb_002157_100 Hb_002374_360--Hb_002157_100 Hb_005433_030 Hb_005433_030 Hb_002374_360--Hb_005433_030 Hb_002045_260 Hb_002045_260 Hb_002374_360--Hb_002045_260 Hb_002374_360--Hb_008080_030 Hb_000862_060--Hb_002157_100 Hb_000862_060--Hb_055147_010 Hb_000862_060--Hb_008080_030 Hb_043522_010 Hb_043522_010 Hb_000862_060--Hb_043522_010 Hb_001832_240 Hb_001832_240 Hb_008080_030--Hb_001832_240 Hb_008080_030--Hb_002157_100 Hb_008080_030--Hb_000046_590 Hb_042098_010 Hb_042098_010 Hb_008080_030--Hb_042098_010 Hb_004703_010 Hb_004703_010 Hb_008080_030--Hb_004703_010 Hb_003413_020 Hb_003413_020 Hb_008080_030--Hb_003413_020 Hb_008215_010 Hb_008215_010 Hb_000046_590--Hb_008215_010 Hb_000046_590--Hb_001832_240 Hb_000598_020 Hb_000598_020 Hb_000046_590--Hb_000598_020 Hb_007765_140 Hb_007765_140 Hb_000046_590--Hb_007765_140 Hb_187991_010 Hb_187991_010 Hb_000046_590--Hb_187991_010 Hb_000001_010 Hb_000001_010 Hb_006925_060--Hb_000001_010 Hb_063523_010 Hb_063523_010 Hb_006925_060--Hb_063523_010 Hb_003680_250 Hb_003680_250 Hb_006925_060--Hb_003680_250 Hb_005628_050 Hb_005628_050 Hb_006925_060--Hb_005628_050 Hb_006925_060--Hb_187991_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.203464 15.7874 17.1157 2.98964 0.495288 0.0741108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117265 0.092266 0.104879 13.6818 0.155831

CAGE analysis