Hb_000001_010

Information

Type -
Description -
Location Contig1: 25447-28123
Sequence    

Annotation

kegg
ID rcu:RCOM_0037070
description calmodulin binding protein, putative
nr
ID XP_012090861.1
description PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9T021
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0037070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000001_010 0.0 - - PREDICTED: uncharacterized protein LOC105648961 [Jatropha curcas]
2 Hb_005628_050 0.121874699 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
3 Hb_006925_060 0.1299283531 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
4 Hb_042098_010 0.1301285731 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
5 Hb_052434_010 0.1367194157 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840 [Sesamum indicum]
6 Hb_002107_110 0.1408915842 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
7 Hb_000495_050 0.1476655175 - - hypothetical protein JCGZ_25174 [Jatropha curcas]
8 Hb_001832_240 0.1491664272 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
9 Hb_025236_020 0.1503892834 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
10 Hb_005814_010 0.1511383324 - - ATP binding protein, putative [Ricinus communis]
11 Hb_184008_010 0.1594857058 - - putative LRR receptor-like serine/threonine-protein kinase [Morus notabilis]
12 Hb_003680_250 0.1596629804 - - PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial isoform X2 [Jatropha curcas]
13 Hb_003077_060 0.160717332 - - PREDICTED: 3-oxo-Delta(4,5)-steroid 5-beta-reductase-like [Jatropha curcas]
14 Hb_001619_020 0.1615470234 - - LRR receptor-like kinase family protein [Medicago truncatula]
15 Hb_000552_090 0.1667784856 - - hypothetical protein JCGZ_18511 [Jatropha curcas]
16 Hb_005016_080 0.1694535007 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
17 Hb_001318_110 0.1704900055 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
18 Hb_000382_030 0.1722988765 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
19 Hb_008080_030 0.1731370858 - - hypothetical protein POPTR_0275s002101g, partial [Populus trichocarpa]
20 Hb_000031_160 0.1733935244 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000001_010 Hb_000001_010 Hb_005628_050 Hb_005628_050 Hb_000001_010--Hb_005628_050 Hb_006925_060 Hb_006925_060 Hb_000001_010--Hb_006925_060 Hb_042098_010 Hb_042098_010 Hb_000001_010--Hb_042098_010 Hb_052434_010 Hb_052434_010 Hb_000001_010--Hb_052434_010 Hb_002107_110 Hb_002107_110 Hb_000001_010--Hb_002107_110 Hb_000495_050 Hb_000495_050 Hb_000001_010--Hb_000495_050 Hb_000031_160 Hb_000031_160 Hb_005628_050--Hb_000031_160 Hb_001832_240 Hb_001832_240 Hb_005628_050--Hb_001832_240 Hb_000382_030 Hb_000382_030 Hb_005628_050--Hb_000382_030 Hb_001377_130 Hb_001377_130 Hb_005628_050--Hb_001377_130 Hb_000598_020 Hb_000598_020 Hb_005628_050--Hb_000598_020 Hb_000417_120 Hb_000417_120 Hb_005628_050--Hb_000417_120 Hb_063523_010 Hb_063523_010 Hb_006925_060--Hb_063523_010 Hb_003680_250 Hb_003680_250 Hb_006925_060--Hb_003680_250 Hb_006925_060--Hb_005628_050 Hb_003751_050 Hb_003751_050 Hb_006925_060--Hb_003751_050 Hb_187991_010 Hb_187991_010 Hb_006925_060--Hb_187991_010 Hb_001581_040 Hb_001581_040 Hb_042098_010--Hb_001581_040 Hb_002045_260 Hb_002045_260 Hb_042098_010--Hb_002045_260 Hb_008080_030 Hb_008080_030 Hb_042098_010--Hb_008080_030 Hb_042098_010--Hb_005628_050 Hb_002774_180 Hb_002774_180 Hb_042098_010--Hb_002774_180 Hb_003529_230 Hb_003529_230 Hb_052434_010--Hb_003529_230 Hb_005814_010 Hb_005814_010 Hb_052434_010--Hb_005814_010 Hb_025236_020 Hb_025236_020 Hb_052434_010--Hb_025236_020 Hb_000359_260 Hb_000359_260 Hb_052434_010--Hb_000359_260 Hb_052434_010--Hb_002107_110 Hb_003077_060 Hb_003077_060 Hb_002107_110--Hb_003077_060 Hb_002107_110--Hb_000359_260 Hb_092458_010 Hb_092458_010 Hb_002107_110--Hb_092458_010 Hb_002107_110--Hb_000495_050 Hb_001635_230 Hb_001635_230 Hb_002107_110--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_002107_110--Hb_002615_010 Hb_000495_050--Hb_005814_010 Hb_000454_080 Hb_000454_080 Hb_000495_050--Hb_000454_080 Hb_005867_030 Hb_005867_030 Hb_000495_050--Hb_005867_030 Hb_000985_140 Hb_000985_140 Hb_000495_050--Hb_000985_140 Hb_002030_180 Hb_002030_180 Hb_000495_050--Hb_002030_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0258248 0.994466 1.30776 0.309281 0.0120917 0.0339543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0294012 0 0 0.645867 0.242476

CAGE analysis