Hb_000604_080

Information

Type -
Description -
Location Contig604: 208465-210530
Sequence    

Annotation

kegg
ID mtr:MTR_3g104940
description Fgenesh protein
nr
ID XP_003603197.1
description Fgenesh protein [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7J8E1
description Mechanosensitive ion channel family protein OS=Medicago truncatula GN=MTR_3g104940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50687: 208789-209308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000604_080 0.0 - - Fgenesh protein [Medicago truncatula]
2 Hb_006478_140 0.0870354801 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
3 Hb_000340_070 0.1223115748 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
4 Hb_127372_010 0.1320211361 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
5 Hb_038601_010 0.1480057942 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
6 Hb_002435_070 0.1493986905 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
7 Hb_004725_040 0.1583629897 - - -
8 Hb_011622_010 0.1602495537 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
9 Hb_000574_270 0.1607678978 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
10 Hb_000953_180 0.1618911486 - - -
11 Hb_002874_210 0.1668357019 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006570_130 0.1672052795 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001361_010 0.1753623885 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_000483_050 0.1789737861 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
15 Hb_008948_070 0.1862053729 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
16 Hb_000365_110 0.1870542071 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
17 Hb_001846_030 0.1911956025 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
18 Hb_008764_010 0.1936484445 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
19 Hb_027065_010 0.1940984833 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
20 Hb_028707_060 0.1950808175 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000604_080 Hb_000604_080 Hb_006478_140 Hb_006478_140 Hb_000604_080--Hb_006478_140 Hb_000340_070 Hb_000340_070 Hb_000604_080--Hb_000340_070 Hb_127372_010 Hb_127372_010 Hb_000604_080--Hb_127372_010 Hb_038601_010 Hb_038601_010 Hb_000604_080--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_000604_080--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_000604_080--Hb_004725_040 Hb_008948_070 Hb_008948_070 Hb_006478_140--Hb_008948_070 Hb_001846_030 Hb_001846_030 Hb_006478_140--Hb_001846_030 Hb_000953_180 Hb_000953_180 Hb_006478_140--Hb_000953_180 Hb_006478_140--Hb_127372_010 Hb_011622_010 Hb_011622_010 Hb_006478_140--Hb_011622_010 Hb_002534_040 Hb_002534_040 Hb_000340_070--Hb_002534_040 Hb_002435_010 Hb_002435_010 Hb_000340_070--Hb_002435_010 Hb_000574_270 Hb_000574_270 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000668_190 Hb_000668_190 Hb_000340_070--Hb_000668_190 Hb_001361_010 Hb_001361_010 Hb_127372_010--Hb_001361_010 Hb_027065_010 Hb_027065_010 Hb_127372_010--Hb_027065_010 Hb_116420_050 Hb_116420_050 Hb_127372_010--Hb_116420_050 Hb_127372_010--Hb_000953_180 Hb_003207_220 Hb_003207_220 Hb_127372_010--Hb_003207_220 Hb_038601_010--Hb_002435_070 Hb_006570_130 Hb_006570_130 Hb_038601_010--Hb_006570_130 Hb_038601_010--Hb_004725_040 Hb_028707_060 Hb_028707_060 Hb_038601_010--Hb_028707_060 Hb_008764_010 Hb_008764_010 Hb_038601_010--Hb_008764_010 Hb_154114_020 Hb_154114_020 Hb_038601_010--Hb_154114_020 Hb_002435_070--Hb_004725_040 Hb_002435_070--Hb_008764_010 Hb_002435_070--Hb_006570_130 Hb_011671_200 Hb_011671_200 Hb_002435_070--Hb_011671_200 Hb_004725_040--Hb_011671_200 Hb_004725_040--Hb_006570_130 Hb_004725_040--Hb_008764_010 Hb_000976_420 Hb_000976_420 Hb_004725_040--Hb_000976_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.248403 0.620589 0.0416698 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0741091 0

CAGE analysis