Hb_000340_070

Information

Type -
Description -
Location Contig340: 82832-91270
Sequence    

Annotation

kegg
ID rcu:RCOM_0176470
description hypothetical protein
nr
ID XP_012092490.1
description PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
swissprot
ID Q9SY14
description CSC1-like protein At4g02900 OS=Arabidopsis thaliana GN=At4g02900 PE=3 SV=1
trembl
ID A0A067JCC4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21967 PE=4 SV=1
Gene Ontology
ID GO:0016020
description csc1-like protein at4g02900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_070 0.0 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
2 Hb_002534_040 0.1096468077 - - Calmodulin, putative [Ricinus communis]
3 Hb_000604_080 0.1223115748 - - Fgenesh protein [Medicago truncatula]
4 Hb_002435_010 0.1236185311 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
5 Hb_000574_270 0.1273712314 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
6 Hb_150745_010 0.1321744201 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
7 Hb_000668_190 0.1358568971 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
8 Hb_000413_220 0.1497691605 - - PREDICTED: kinesin-1 [Jatropha curcas]
9 Hb_002874_210 0.1505925342 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000280_100 0.1540299194 - - hypothetical protein JCGZ_13378 [Jatropha curcas]
11 Hb_127372_010 0.1596849702 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
12 Hb_004650_040 0.1619743546 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
13 Hb_007101_250 0.1637461216 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
14 Hb_000042_020 0.1680581094 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
15 Hb_052764_120 0.1732621806 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
16 Hb_000953_180 0.1740063563 - - -
17 Hb_000483_050 0.1765080995 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
18 Hb_006478_140 0.1785157173 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
19 Hb_010578_020 0.1788314886 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000365_110 0.1791334384 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]

Gene co-expression network

sample Hb_000340_070 Hb_000340_070 Hb_002534_040 Hb_002534_040 Hb_000340_070--Hb_002534_040 Hb_000604_080 Hb_000604_080 Hb_000340_070--Hb_000604_080 Hb_002435_010 Hb_002435_010 Hb_000340_070--Hb_002435_010 Hb_000574_270 Hb_000574_270 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000668_190 Hb_000668_190 Hb_000340_070--Hb_000668_190 Hb_002534_040--Hb_000668_190 Hb_000413_220 Hb_000413_220 Hb_002534_040--Hb_000413_220 Hb_002534_040--Hb_002435_010 Hb_004724_250 Hb_004724_250 Hb_002534_040--Hb_004724_250 Hb_010672_040 Hb_010672_040 Hb_002534_040--Hb_010672_040 Hb_006478_140 Hb_006478_140 Hb_000604_080--Hb_006478_140 Hb_127372_010 Hb_127372_010 Hb_000604_080--Hb_127372_010 Hb_038601_010 Hb_038601_010 Hb_000604_080--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_000604_080--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_000604_080--Hb_004725_040 Hb_052764_120 Hb_052764_120 Hb_002435_010--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002435_010--Hb_002267_010 Hb_010578_020 Hb_010578_020 Hb_002435_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_002435_010--Hb_003207_220 Hb_048141_060 Hb_048141_060 Hb_002435_010--Hb_048141_060 Hb_002435_010--Hb_000668_190 Hb_000365_110 Hb_000365_110 Hb_000574_270--Hb_000365_110 Hb_000953_180 Hb_000953_180 Hb_000574_270--Hb_000953_180 Hb_000483_050 Hb_000483_050 Hb_000574_270--Hb_000483_050 Hb_000574_270--Hb_150745_010 Hb_000192_030 Hb_000192_030 Hb_000574_270--Hb_000192_030 Hb_000574_270--Hb_000413_220 Hb_001754_100 Hb_001754_100 Hb_150745_010--Hb_001754_100 Hb_150745_010--Hb_000413_220 Hb_000574_180 Hb_000574_180 Hb_150745_010--Hb_000574_180 Hb_150745_010--Hb_000483_050 Hb_000397_170 Hb_000397_170 Hb_150745_010--Hb_000397_170 Hb_000668_190--Hb_000413_220 Hb_000739_250 Hb_000739_250 Hb_000668_190--Hb_000739_250 Hb_000668_190--Hb_000574_180 Hb_000164_030 Hb_000164_030 Hb_000668_190--Hb_000164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0159848 0.0793849 0.00670199 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00625337 0

CAGE analysis