Hb_000365_110

Information

Type transcription factor
Description TF Family: GRAS
Location Contig365: 94479-97483
Sequence    

Annotation

kegg
ID rcu:RCOM_1323550
description transcription factor, putative
nr
ID XP_012090957.1
description PREDICTED: protein SCARECROW [Jatropha curcas]
swissprot
ID Q2Z2E9
description Protein SCARECROW OS=Ipomoea nil GN=SCR PE=1 SV=1
trembl
ID A0A067JD88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00598 PE=4 SV=1
Gene Ontology
ID GO:0006351
description protein scarecrow-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37555: 94533-97862
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_110 0.0 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
2 Hb_000953_180 0.0652365251 - - -
3 Hb_000574_270 0.0659134362 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
4 Hb_000483_050 0.0885427107 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
5 Hb_100395_010 0.0944130289 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_000192_030 0.0994537125 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
7 Hb_008948_070 0.1104941339 - - PREDICTED: phospholipase D alpha 1-like isoform X1 [Jatropha curcas]
8 Hb_008115_030 0.1261293314 - - Taxadien-5-alpha-ol O-acetyltransferase, putative [Ricinus communis]
9 Hb_007101_250 0.13823222 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
10 Hb_001971_030 0.141696471 - - PREDICTED: exonuclease 1 [Jatropha curcas]
11 Hb_007894_040 0.1425994312 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
12 Hb_002540_100 0.1428620175 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
13 Hb_000856_230 0.1443686863 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]
14 Hb_012146_010 0.1451370843 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
15 Hb_096974_010 0.1452363176 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
16 Hb_007747_070 0.1464701009 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
17 Hb_004297_050 0.1480604201 - - cytochrome P450, putative [Ricinus communis]
18 Hb_021142_030 0.1486090434 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_055877_010 0.1510327525 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
20 Hb_150745_010 0.1523652919 - - hypothetical protein JCGZ_17337 [Jatropha curcas]

Gene co-expression network

sample Hb_000365_110 Hb_000365_110 Hb_000953_180 Hb_000953_180 Hb_000365_110--Hb_000953_180 Hb_000574_270 Hb_000574_270 Hb_000365_110--Hb_000574_270 Hb_000483_050 Hb_000483_050 Hb_000365_110--Hb_000483_050 Hb_100395_010 Hb_100395_010 Hb_000365_110--Hb_100395_010 Hb_000192_030 Hb_000192_030 Hb_000365_110--Hb_000192_030 Hb_008948_070 Hb_008948_070 Hb_000365_110--Hb_008948_070 Hb_000953_180--Hb_000192_030 Hb_000953_180--Hb_000574_270 Hb_000953_180--Hb_100395_010 Hb_000953_180--Hb_008948_070 Hb_000953_180--Hb_000483_050 Hb_000574_270--Hb_000483_050 Hb_150745_010 Hb_150745_010 Hb_000574_270--Hb_150745_010 Hb_000574_270--Hb_000192_030 Hb_000413_220 Hb_000413_220 Hb_000574_270--Hb_000413_220 Hb_001971_030 Hb_001971_030 Hb_000483_050--Hb_001971_030 Hb_000656_120 Hb_000656_120 Hb_000483_050--Hb_000656_120 Hb_000483_050--Hb_150745_010 Hb_100395_010--Hb_000192_030 Hb_021142_030 Hb_021142_030 Hb_100395_010--Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_100395_010--Hb_009385_010 Hb_001410_040 Hb_001410_040 Hb_100395_010--Hb_001410_040 Hb_010223_010 Hb_010223_010 Hb_000192_030--Hb_010223_010 Hb_000192_030--Hb_008948_070 Hb_107174_010 Hb_107174_010 Hb_000192_030--Hb_107174_010 Hb_001846_030 Hb_001846_030 Hb_008948_070--Hb_001846_030 Hb_096974_010 Hb_096974_010 Hb_008948_070--Hb_096974_010 Hb_006478_140 Hb_006478_140 Hb_008948_070--Hb_006478_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.50348 9.13048 2.5405 0.00727405 0.00679677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0164871 0 0 0.571606 0.0276158

CAGE analysis