Hb_001361_010

Information

Type -
Description -
Location Contig1361: 20988-22874
Sequence    

Annotation

kegg
ID rcu:RCOM_0495210
description Auxin-induced in root cultures protein 12 precursor, putative
nr
ID XP_002532004.1
description Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
swissprot
ID Q9FKH6
description Cytochrome b561 and DOMON domain-containing protein At5g35735 OS=Arabidopsis thaliana GN=At5g35735 PE=2 SV=1
trembl
ID B9T181
description Auxin-induced in root cultures protein 12, putative OS=Ricinus communis GN=RCOM_0495210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10040: 20935-21200
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001361_010 0.0 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
2 Hb_127372_010 0.0983140524 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
3 Hb_104641_010 0.1084590191 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
4 Hb_027065_010 0.1262523116 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
5 Hb_074672_010 0.1309785717 - - receptor serine/threonine kinase, putative [Ricinus communis]
6 Hb_086614_010 0.144457259 transcription factor TF Family: Orphans PREDICTED: zinc finger protein HD1-like isoform X1 [Jatropha curcas]
7 Hb_116420_050 0.1495893286 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
8 Hb_155896_010 0.1524690563 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
9 Hb_107174_010 0.1583851291 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000433_050 0.1604448164 - - PREDICTED: cell number regulator 1 isoform X1 [Vitis vinifera]
11 Hb_006615_060 0.1637272591 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010223_010 0.1650940034 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
13 Hb_028707_060 0.1682327968 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
14 Hb_003207_220 0.1685781732 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
15 Hb_077694_010 0.1693644102 - - uncharacterized protein LOC100305624 [Glycine max]
16 Hb_032071_010 0.1699520883 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
17 Hb_179363_010 0.172104855 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_006478_140 0.172495195 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
19 Hb_120011_010 0.1742401645 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
20 Hb_000604_080 0.1753623885 - - Fgenesh protein [Medicago truncatula]

Gene co-expression network

sample Hb_001361_010 Hb_001361_010 Hb_127372_010 Hb_127372_010 Hb_001361_010--Hb_127372_010 Hb_104641_010 Hb_104641_010 Hb_001361_010--Hb_104641_010 Hb_027065_010 Hb_027065_010 Hb_001361_010--Hb_027065_010 Hb_074672_010 Hb_074672_010 Hb_001361_010--Hb_074672_010 Hb_086614_010 Hb_086614_010 Hb_001361_010--Hb_086614_010 Hb_116420_050 Hb_116420_050 Hb_001361_010--Hb_116420_050 Hb_127372_010--Hb_027065_010 Hb_127372_010--Hb_116420_050 Hb_000953_180 Hb_000953_180 Hb_127372_010--Hb_000953_180 Hb_003207_220 Hb_003207_220 Hb_127372_010--Hb_003207_220 Hb_000604_080 Hb_000604_080 Hb_127372_010--Hb_000604_080 Hb_104641_010--Hb_074672_010 Hb_171974_010 Hb_171974_010 Hb_104641_010--Hb_171974_010 Hb_000433_050 Hb_000433_050 Hb_104641_010--Hb_000433_050 Hb_120011_010 Hb_120011_010 Hb_104641_010--Hb_120011_010 Hb_000025_490 Hb_000025_490 Hb_104641_010--Hb_000025_490 Hb_027065_010--Hb_116420_050 Hb_027065_010--Hb_003207_220 Hb_000866_430 Hb_000866_430 Hb_027065_010--Hb_000866_430 Hb_000042_020 Hb_000042_020 Hb_027065_010--Hb_000042_020 Hb_074672_010--Hb_120011_010 Hb_077694_010 Hb_077694_010 Hb_074672_010--Hb_077694_010 Hb_006615_060 Hb_006615_060 Hb_074672_010--Hb_006615_060 Hb_000959_240 Hb_000959_240 Hb_074672_010--Hb_000959_240 Hb_017693_040 Hb_017693_040 Hb_074672_010--Hb_017693_040 Hb_001619_140 Hb_001619_140 Hb_074672_010--Hb_001619_140 Hb_018633_010 Hb_018633_010 Hb_086614_010--Hb_018633_010 Hb_086614_010--Hb_077694_010 Hb_000111_240 Hb_000111_240 Hb_086614_010--Hb_000111_240 Hb_086614_010--Hb_006615_060 Hb_086614_010--Hb_074672_010 Hb_164146_020 Hb_164146_020 Hb_086614_010--Hb_164146_020 Hb_116420_050--Hb_003207_220 Hb_116420_050--Hb_000042_020 Hb_007919_070 Hb_007919_070 Hb_116420_050--Hb_007919_070 Hb_116420_050--Hb_000866_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0200811 35.2602 58.7036 3.75386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.260485 0 1.42402 1.26337

CAGE analysis