Hb_042083_060

Information

Type -
Description -
Location Contig42083: 51250-55684
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05780g
description POPTRDRAFT_758760; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012091804.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
swissprot
ID C0LGU5
description Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1
trembl
ID B9H2G4
description Leucine-rich repeat transmembrane protein kinase OS=Populus trichocarpa GN=POPTR_0004s05780g PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at5g45780 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41582: 56453-61201
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042083_060 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
2 Hb_009070_030 0.1103485489 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
3 Hb_008554_090 0.1335923293 - - zinc finger protein, putative [Ricinus communis]
4 Hb_010598_010 0.1475068858 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
5 Hb_002110_060 0.1521086389 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
6 Hb_004525_110 0.1602041378 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
7 Hb_001454_290 0.1657924499 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
8 Hb_001318_110 0.1742900408 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
9 Hb_000836_610 0.181760524 - - stem-specific protein TSJT1-like [Jatropha curcas]
10 Hb_001002_090 0.1891088518 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
11 Hb_000227_370 0.190275032 - - sugar transporter, putative [Ricinus communis]
12 Hb_003050_050 0.1921497971 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
13 Hb_010164_020 0.1921861775 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
14 Hb_001723_070 0.1921991067 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
15 Hb_001832_240 0.1928553977 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_000723_050 0.193526043 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
17 Hb_055440_010 0.1940207642 - - protein binding protein, putative [Ricinus communis]
18 Hb_010174_170 0.1947718641 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
19 Hb_000051_030 0.1950602302 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
20 Hb_162286_030 0.1954970537 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]

Gene co-expression network

sample Hb_042083_060 Hb_042083_060 Hb_009070_030 Hb_009070_030 Hb_042083_060--Hb_009070_030 Hb_008554_090 Hb_008554_090 Hb_042083_060--Hb_008554_090 Hb_010598_010 Hb_010598_010 Hb_042083_060--Hb_010598_010 Hb_002110_060 Hb_002110_060 Hb_042083_060--Hb_002110_060 Hb_004525_110 Hb_004525_110 Hb_042083_060--Hb_004525_110 Hb_001454_290 Hb_001454_290 Hb_042083_060--Hb_001454_290 Hb_009070_030--Hb_008554_090 Hb_009070_030--Hb_002110_060 Hb_009070_030--Hb_010598_010 Hb_001002_090 Hb_001002_090 Hb_009070_030--Hb_001002_090 Hb_055440_010 Hb_055440_010 Hb_009070_030--Hb_055440_010 Hb_008554_090--Hb_002110_060 Hb_005730_070 Hb_005730_070 Hb_008554_090--Hb_005730_070 Hb_008554_090--Hb_004525_110 Hb_150730_010 Hb_150730_010 Hb_008554_090--Hb_150730_010 Hb_004096_010 Hb_004096_010 Hb_010598_010--Hb_004096_010 Hb_072997_010 Hb_072997_010 Hb_010598_010--Hb_072997_010 Hb_010598_010--Hb_055440_010 Hb_010598_010--Hb_001002_090 Hb_001288_020 Hb_001288_020 Hb_010598_010--Hb_001288_020 Hb_162286_030 Hb_162286_030 Hb_002110_060--Hb_162286_030 Hb_000009_130 Hb_000009_130 Hb_002110_060--Hb_000009_130 Hb_002110_060--Hb_005730_070 Hb_002110_060--Hb_001454_290 Hb_022092_050 Hb_022092_050 Hb_004525_110--Hb_022092_050 Hb_000696_030 Hb_000696_030 Hb_004525_110--Hb_000696_030 Hb_004551_050 Hb_004551_050 Hb_004525_110--Hb_004551_050 Hb_033312_050 Hb_033312_050 Hb_004525_110--Hb_033312_050 Hb_001349_020 Hb_001349_020 Hb_004525_110--Hb_001349_020 Hb_002871_050 Hb_002871_050 Hb_001454_290--Hb_002871_050 Hb_005679_110 Hb_005679_110 Hb_001454_290--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001454_290--Hb_001345_020 Hb_001454_290--Hb_005730_070 Hb_000723_050 Hb_000723_050 Hb_001454_290--Hb_000723_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.513992 4.1574 7.51607 5.03347 0.0872957 0.297708
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.207499 0.163271 0.279198 10.295 0.276632

CAGE analysis